SFPQ (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000013930 T42657_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000013207 RRM 293 357
ENSTTRP00000013207 RRM 367 434

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG08763 Caenorhabditis briggsae CBG08763 N 0.000
CRE29150 Caenorhabditis remanei CRE29150 N 0.000
CRE06628 Caenorhabditis remanei CRE06628 N 0.000
CRE03331 Caenorhabditis remanei CRE03331 N 0.000
CJA21035 Caenorhabditis japonica CJA21035 N 0.000
CJA17739 Caenorhabditis japonica CJA17739 N 0.000
CJA17118 Caenorhabditis japonica CJA17118 N 0.000
CJA14117 Caenorhabditis japonica CJA14117 N 0.000
CJA11030 Caenorhabditis japonica CJA11030 N 0.000
CJA05078 Caenorhabditis japonica CJA05078 N 0.000
CJA00955 Caenorhabditis japonica CJA00955 N 0.000
CJA00525 Caenorhabditis japonica CJA00525 N 0.000
CJA00265 Caenorhabditis japonica CJA00265 N 0.000
Aqu1.224465 Amphimedon queenslandica Aqu1.224465 N 0.000