CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF6
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000002850
T42719_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000002635
RRM
1
29
CAFLTYCARDSALKAQSALHEQKTLPGXX
ENSVPAP00000002635
RRM
48
115
LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGA
ENSVPAP00000002635
RRM
331
379
XAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ006186
Culex pipiens
CpipJ_CPIJ006186
N
0.000
GK10580
Drosophila willistoni
FBgn0212595
N
0.000
GJ13732
Drosophila virilis
FBgn0200953
N
0.000
GD14504
Drosophila simulans
FBgn0186186
N
0.000
GM25483
Drosophila sechellia
FBgn0180340
N
0.000
GL26040
Drosophila persimilis
FBgn0163622
N
0.000
GH16935
Drosophila grimshawi
FBgn0124406
N
0.000
GG15699
Drosophila erecta
FBgn0107943
N
0.000
GF24619
Drosophila ananassae
FBgn0101612
N
0.000
GA21777-RA
Drosophila pseudoobscura
FBgn0081762
N
0.000
CG9425
Drosophila melanogaster
FBgn0036451
N
0.000
CPIJ006186
Culex quinquefasciatus
CPIJ006186
N
0.000
GE22030
Drosophila yakuba
FBgn0239262
N
0.000