CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF6
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000002850
T42719_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000002635
RRM
1
29
CAFLTYCARDSALKAQSALHEQKTLPGXX
ENSVPAP00000002635
RRM
48
115
LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGA
ENSVPAP00000002635
RRM
331
379
XAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.809
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.720
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.708
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.708
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.708
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.707
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.703
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.702