LOC_Os05g01540 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os05g01540 T45038_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g01540.1 RRM 114 184
LOC_Os05g01540.2 RRM 114 184

Links

Other RRM family RBPs
Other Oryza sativa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK27218.1 Cannabis sativa PK27218.1 N 0.746
cassava30720.valid.m1 Manihot esculenta cassava30720.valid.m1 N 0.775
cassava34023.m1 Manihot esculenta cassava34023.m1 N 0.775
cassava34024.m1 Manihot esculenta cassava34024.m1 N 0.775
estExt_fgenesh1_pg.C_1180104 Physcomitrella patens estExt_fgenesh1_pg.C_1180104 N 0.761
estExt_fgenesh1_pm.C_350034 Physcomitrella patens estExt_fgenesh1_pm.C_350034 N 0.746
Glyma15g40710.1 Glycine max Glyma15g40710.1 N 0.775
mgf001217m Mimulus guttatus mgf001217m N 0.732
GRMZM2G060540 Zea mays GRMZM2G060540 N 0.845
GRMZM2G133926 Zea mays GRMZM2G133926 N 0.873
MDP0000257660 Malus x domestica MDP0000257660 N 0.761
MDP0000286005 Malus x domestica MDP0000286005 N 0.761
ppa006711m Prunus persica ppa006711m N 0.718
cassava30719.valid.m1 Manihot esculenta cassava30719.valid.m1 N 0.775
cassava30718.valid.m1 Manihot esculenta cassava30718.valid.m1 N 0.775
cassava30717.valid.m1 Manihot esculenta cassava30717.valid.m1 N 0.775
RNPS1 Arabidopsis thaliana AT1G16610-TAIR-G N 0.789
BGIOSIBCE005072 Oryza indica BGIOSIBCE005072 N 0.873
BGIOSIBCE017247 Oryza indica BGIOSIBCE017247 N 1.000
BRADI2G39730 Brachypodium distachyon BRADI2G39730 N 0.915
BRADI2G61380 Brachypodium distachyon BRADI2G61380 N 0.887
XM_002892870.1 Arabidopsis lyrata fgenesh2_kg.1__1815__AT1G16610.2 N 0.732
GSVIVG00020424001 Vitis vinifera GSVIVG00020424001 N 0.775
LOC_Os01g72890 Oryza sativa LOC_Os01g72890 N 0.873
A9PFW8_POPTR Populus trichocarpa POPTR_0011s14630 N 0.789
SB03G046480 Sorghum bicolor Sb03g046480 N 0.859
30169.m006358 Ricinus communis 30169.m006358 N 0.775
ppa006722m Prunus persica ppa006722m N 0.718