RNPS1 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G16610-TAIR-G T32637_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G16610.1-P RRM 100 170
AT1G16610.2-P RRM 100 170

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892870.1 Arabidopsis lyrata fgenesh2_kg.1__1815__AT1G16610.2 N 0.887
30169.m006358 Ricinus communis 30169.m006358 N 0.817
A9PFW8_POPTR Populus trichocarpa POPTR_0011s14630 N 0.817
GSVIVG00020424001 Vitis vinifera GSVIVG00020424001 N 0.817
BRADI2G61380 Brachypodium distachyon BRADI2G61380 N 0.817
BRADI2G39730 Brachypodium distachyon BRADI2G39730 N 0.817
GRMZM2G133926 Zea mays GRMZM2G133926 N 0.803
cassava30720.valid.m1 Manihot esculenta cassava30720.valid.m1 N 0.803
cassava34024.m1 Manihot esculenta cassava34024.m1 N 0.803
cassava34023.m1 Manihot esculenta cassava34023.m1 N 0.803
cassava30718.valid.m1 Manihot esculenta cassava30718.valid.m1 N 0.803
cassava30719.valid.m1 Manihot esculenta cassava30719.valid.m1 N 0.803
LOC_Os01g72890 Oryza sativa LOC_Os01g72890 N 0.803
cassava30717.valid.m1 Manihot esculenta cassava30717.valid.m1 N 0.803
BGIOSIBCE005072 Oryza indica BGIOSIBCE005072 N 0.803
BGIOSIBCE017247 Oryza indica BGIOSIBCE017247 N 0.789
Glyma15g40710.1 Glycine max Glyma15g40710.1 N 0.789
LOC_Os05g01540 Oryza sativa LOC_Os05g01540 N 0.789
SB03G046480 Sorghum bicolor Sb03g046480 N 0.789
MDP0000286005 Malus x domestica MDP0000286005 N 0.775
GRMZM2G060540 Zea mays GRMZM2G060540 N 0.775
MDP0000257660 Malus x domestica MDP0000257660 N 0.775
mgf001217m Mimulus guttatus mgf001217m N 0.775
PK27218.1 Cannabis sativa PK27218.1 N 0.761
ppa006722m Prunus persica ppa006722m N 0.761
ppa006711m Prunus persica ppa006711m N 0.761
estExt_fgenesh1_pg.C_1180104 Physcomitrella patens estExt_fgenesh1_pg.C_1180104 N 0.732
estExt_fgenesh1_pm.C_350034 Physcomitrella patens estExt_fgenesh1_pm.C_350034 N 0.704