cassava30720.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava30720.valid.m1 T49290_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30720.valid.m1 RRM 110 180

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30717.valid.m1 Manihot esculenta cassava30717.valid.m1 N 1.000
cassava34023.m1 Manihot esculenta cassava34023.m1 N 1.000
cassava30718.valid.m1 Manihot esculenta cassava30718.valid.m1 N 1.000
cassava34024.m1 Manihot esculenta cassava34024.m1 N 1.000
cassava30719.valid.m1 Manihot esculenta cassava30719.valid.m1 N 1.000
GSVIVG00020424001 Vitis vinifera GSVIVG00020424001 N 0.901
A9PFW8_POPTR Populus trichocarpa POPTR_0011s14630 N 0.887
30169.m006358 Ricinus communis 30169.m006358 N 0.887
MDP0000257660 Malus x domestica MDP0000257660 N 0.859
MDP0000286005 Malus x domestica MDP0000286005 N 0.859
PK27218.1 Cannabis sativa PK27218.1 N 0.859
Glyma15g40710.1 Glycine max Glyma15g40710.1 N 0.817
ppa006711m Prunus persica ppa006711m N 0.817
ppa006722m Prunus persica ppa006722m N 0.817
RNPS1 Arabidopsis thaliana AT1G16610-TAIR-G N 0.803
BGIOSIBCE005072 Oryza indica BGIOSIBCE005072 N 0.789
XM_002892870.1 Arabidopsis lyrata fgenesh2_kg.1__1815__AT1G16610.2 N 0.789
GRMZM2G133926 Zea mays GRMZM2G133926 N 0.789
BRADI2G39730 Brachypodium distachyon BRADI2G39730 N 0.789
LOC_Os01g72890 Oryza sativa LOC_Os01g72890 N 0.789
SB03G046480 Sorghum bicolor Sb03g046480 N 0.775
LOC_Os05g01540 Oryza sativa LOC_Os05g01540 N 0.775
BGIOSIBCE017247 Oryza indica BGIOSIBCE017247 N 0.775
BRADI2G61380 Brachypodium distachyon BRADI2G61380 N 0.775
estExt_fgenesh1_pg.C_1180104 Physcomitrella patens estExt_fgenesh1_pg.C_1180104 N 0.761
GRMZM2G060540 Zea mays GRMZM2G060540 N 0.761
mgf001217m Mimulus guttatus mgf001217m N 0.761
estExt_fgenesh1_pm.C_350034 Physcomitrella patens estExt_fgenesh1_pm.C_350034 N 0.746