XM_002892870.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__1815__AT1G16610.2 T44483_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1815__AT1G16610.2 RRM 106 176

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RNPS1 Arabidopsis thaliana AT1G16610-TAIR-G N 0.887
cassava30720.valid.m1 Manihot esculenta cassava30720.valid.m1 N 0.789
cassava30719.valid.m1 Manihot esculenta cassava30719.valid.m1 N 0.789
cassava34023.m1 Manihot esculenta cassava34023.m1 N 0.789
cassava34024.m1 Manihot esculenta cassava34024.m1 N 0.789
mgf001217m Mimulus guttatus mgf001217m N 0.789
cassava30718.valid.m1 Manihot esculenta cassava30718.valid.m1 N 0.789
cassava30717.valid.m1 Manihot esculenta cassava30717.valid.m1 N 0.789
30169.m006358 Ricinus communis 30169.m006358 N 0.789
A9PFW8_POPTR Populus trichocarpa POPTR_0011s14630 N 0.775
GSVIVG00020424001 Vitis vinifera GSVIVG00020424001 N 0.775
BRADI2G61380 Brachypodium distachyon BRADI2G61380 N 0.746
GRMZM2G133926 Zea mays GRMZM2G133926 N 0.746
Glyma15g40710.1 Glycine max Glyma15g40710.1 N 0.746
LOC_Os01g72890 Oryza sativa LOC_Os01g72890 N 0.732
LOC_Os05g01540 Oryza sativa LOC_Os05g01540 N 0.732
BGIOSIBCE005072 Oryza indica BGIOSIBCE005072 N 0.732
BGIOSIBCE017247 Oryza indica BGIOSIBCE017247 N 0.732
MDP0000286005 Malus x domestica MDP0000286005 N 0.732
MDP0000257660 Malus x domestica MDP0000257660 N 0.732
GRMZM2G060540 Zea mays GRMZM2G060540 N 0.732
SB03G046480 Sorghum bicolor Sb03g046480 N 0.732
PK27218.1 Cannabis sativa PK27218.1 N 0.718
BRADI2G39730 Brachypodium distachyon BRADI2G39730 N 0.718
ppa006722m Prunus persica ppa006722m N 0.704
ppa006711m Prunus persica ppa006711m N 0.704
estExt_fgenesh1_pg.C_1180104 Physcomitrella patens estExt_fgenesh1_pg.C_1180104 N 0.704