cassava19116.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava19116.valid.m1 T49166_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19116.valid.m1 RRM 54 124

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK03835.1 Cannabis sativa PK03835.1 N 0.873
ppa010343m Prunus persica ppa010343m N 0.915
MDP0000124152 Malus x domestica MDP0000124152 N 0.718
chr4.LjT32J05.120.nc Lotus japonicus chr4.LjT32J05.120.nc N 0.887
Medtr8g139830 Medicago truncatula Medtr8g139830 N 0.887
mgf013231m Mimulus guttatus mgf013231m N 0.789
Glyma17g02470.1 Glycine max Glyma17g02470.1 N 0.915
Glyma07g38270.1 Glycine max Glyma07g38270.1 N 0.915
Cucsa.253680 Cucumis sativus Cucsa.253680 N 0.873
cassava19117.valid.m1 Manihot esculenta cassava19117.valid.m1 N 1.000
29726.m003960 Ricinus communis 29726.m003960 N 0.986
SB01G034590 Sorghum bicolor Sb01g034590 N 0.718
A9PDA2_POPTR Populus trichocarpa POPTR_0010s02700 N 0.873
B9HM84_POPTR Populus trichocarpa POPTR_0008s20120 N 0.859
LOC_Os03g24890 Oryza sativa LOC_Os03g24890 N 0.718
GSVIVG00022010001 Vitis vinifera GSVIVG00022010001 N 0.831
BGIOSIBCE011211 Oryza indica BGIOSIBCE011211 N 0.718
SCL28 Arabidopsis thaliana AT5G18810-TAIR-G N 0.817
ppa010360m Prunus persica ppa010360m N 0.915