CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_542254.2
(
Canis familiaris
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSCAFG00000025134
T00456_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000034751
CCCH ZF
158
184
RDRADCPFYRKTGACRFGDRCSRRHDL
ENSCAFP00000034751
RRM
226
289
HFRAFYDDVLPEFRAVGTVVQFKVSRNLEPHLRGNVYVQYRSEAECRAALSLFNGRWYAGRRLQ
ENSCAFP00000034751
CCCH ZF
298
323
WKAAICGLSELRRCPRGRRCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Canis familiaris
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.778
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.744
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.778
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.778
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.778
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.761
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.709
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.769
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.761
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.735
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.709
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.778
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.761
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.726
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.778
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.769
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.769
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.726
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.761
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.769
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.769
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.718
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.778
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.744
Zrsr1
Dipodomys ordii
ENSDORG00000001238
N
0.709
ZRSR1
Homo sapiens
ENSG00000212643
N
0.769
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.744
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.769
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.709
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.769
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.735
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.718
ZRSR2
Homo sapiens
ENSG00000169249
N
0.769
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.735
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.769