CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMGAG00000014689
(
Meleagris gallopavo
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMGAG00000014689
T00544_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000015563
CCCH ZF
162
188
KDRANCPFYIKTGSCRFGDRCSRKHNY
ENSMGAP00000015563
RRM
235
293
YEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALALFSGRWYAGRQLH
ENSMGAP00000015563
CCCH ZF
302
327
WKTAICGLFERQKCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Meleagris gallopavo
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZRSR2
Gallus gallus
ENSGALG00000016552
N
1.000
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.991
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.911
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.893
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.884
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.866
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.866
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.866
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.866
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.866
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.866
ZRSR1
Homo sapiens
ENSG00000212643
N
0.866
ZRSR2
Homo sapiens
ENSG00000169249
N
0.866
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.866
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.857
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.857
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.857
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.857
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.857
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.857
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.857
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.848
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.848
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.848
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.839
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.830
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.830
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.821
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.812
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.812
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.804
Zrsr1
Dipodomys ordii
ENSDORG00000001238
N
0.804
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.804
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.795
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.786
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.786
Q9W6Q9_FUGRU
Takifugu rubripes
ENSTRUG00000017089
N
0.786
zrsr2
Danio rerio
ENSDARG00000058448
N
0.777
XM_542254.2
Canis familiaris
ENSCAFG00000025134
N
0.709
ZRSR2
Oryzias latipes
ENSORLG00000003476
N
0.705