CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSBTAG00000020419
(
Bos taurus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSBTAG00000020419
T00446_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000027211
CCCH ZF
217
243
KDRANCPFYSKTGACRFGDRCSRKHNF
ENSBTAP00000027211
RRM
290
348
YDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQ
ENSBTAP00000027211
CCCH ZF
357
382
WKMAICGLFEIQQCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Bos taurus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
1.000
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
1.000
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
1.000
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.991
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.991
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.991
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.991
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.991
ZRSR1
Homo sapiens
ENSG00000212643
N
0.991
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.991
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.991
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.991
ZRSR2
Homo sapiens
ENSG00000169249
N
0.991
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.982
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.982
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.973
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.973
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.964
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.955
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.946
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.938
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.938
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.938
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.929
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.920
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.911
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.902
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.902
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.902
Zrsr1
Dipodomys ordii
ENSDORG00000001238
N
0.884
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.866
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.857
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.857
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.821
XM_542254.2
Canis familiaris
ENSCAFG00000025134
N
0.778
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.777
zrsr2
Danio rerio
ENSDARG00000058448
N
0.768
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.759
Q9W6Q9_FUGRU
Takifugu rubripes
ENSTRUG00000017089
N
0.759