CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zrsr1
(
Dipodomys ordii
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSDORG00000001238
T00488_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000001160
CCCH ZF
166
192
KDRASCPFYTKTGACRFGDRCSRKHNF
ENSDORP00000001160
RRM
239
297
YDDVLPEFRNVGKVIQFKXXXXXXXHLRGNVYVQYQTEEECQSALALFNGRWYAGRQLQ
ENSDORP00000001160
CCCH ZF
306
331
WKMAICGLFEIQQCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Dipodomys ordii
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.884
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.884
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.884
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.884
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.884
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.875
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.875
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.875
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.875
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.875
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.875
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.875
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.875
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.875
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.875
ZRSR1
Homo sapiens
ENSG00000212643
N
0.875
ZRSR2
Homo sapiens
ENSG00000169249
N
0.875
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.866
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.857
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.857
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.848
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.830
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.830
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.830
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.821
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.821
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.821
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.812
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.812
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.812
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.804
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.804
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.795
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.741
XM_542254.2
Canis familiaris
ENSCAFG00000025134
N
0.709
zrsr2
Danio rerio
ENSDARG00000058448
N
0.705