fgenesh1_pg.00771_#_421 (Aspergillus carbonarius)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pg.00771_#_421 T01076_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.00771_#_421 CCCH ZF 13 39
fgenesh1_pg.00771_#_421 RRM 65 134
fgenesh1_pg.00771_#_421 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Aspergillus carbonarius RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28462.m000127 Ricinus communis 28462.m000127 N 0.000
AT1G60650 Arabidopsis thaliana AT1G60650-TAIR-G N 0.000
cassava30311.valid.m1 Manihot esculenta cassava30311.valid.m1 N 0.000
cassava30312.valid.m1 Manihot esculenta cassava30312.valid.m1 N 0.000
Cucsa.308610 Cucumis sativus Cucsa.308610 N 0.000
Cucsa.317370 Cucumis sativus Cucsa.317370 N 0.000
Glyma10g42320.1 Glycine max Glyma10g42320.1 N 0.000
Glyma20g24730.1 Glycine max Glyma20g24730.1 N 0.000
GSVIVG00033666001 Vitis vinifera GSVIVG00033666001 N 0.000
MDP0000088428 Malus x domestica MDP0000088428 N 0.000
MDP0000272138 Malus x domestica MDP0000272138 N 0.000
mgf007889m Mimulus guttatus mgf007889m N 0.000
ppa009799m Prunus persica ppa009799m N 0.000
XM_002871038.1 Arabidopsis lyrata fgenesh2_kg.6__343__AT5G04280.1 N 0.000
XM_002888081.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000318 N 0.000