CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSF4L
(
Homo sapiens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSG00000187959
T02658_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000343900
CCCH ZF
37
61
ASAVCNFFTKGLCEKGKLCPFRHDR
ENSP00000343900
CCCH ZF
63
87
EKMVVCKHWLRGLCKKGDHCKFLHQ
ENSP00000343900
CCCH ZF
91
116
TRMPECYFYSKFGDCSNKECSFLHVK
ENSP00000343900
CCCH ZF
119
144
FKSQDCPWYDQGFCKDGPLCKYRHVP
ENSP00000343900
CCCH ZF
145
165
RIMCLNYLVGFCPEGPKCQFA
ENSP00000380788
CCCH ZF
1
23
MVVCKHWLRGLCKKGDHCKFLHQ
ENSP00000380788
CCCH ZF
27
52
TRMPECYFYSKFGDCSNKECSFLHVK
ENSP00000380788
CCCH ZF
55
81
FKSQDCPWYDQGFCKDAGPLCKYRHVP
ENSP00000380788
CCCH ZF
82
105
RIMCLNYLVGFCPEGPKCQFAHCS
Links
Other
CCCH ZF
family RBPs
Other
Homo sapiens
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R014798
Ailuropoda melanoleuca
Ame_R014798
N
0.800
CPSF4L
Tursiops truncatus
ENSTTRG00000005243
N
0.901
CPSF4L
Pteropus vampyrus
ENSPVAG00000006736
N
0.870
CPSF4L
Pan troglodytes
ENSPTRG00000009598
N
1.000
CPSF4L
Ochotona princeps
ENSOPRG00000007484
N
0.792
CPSF4L
Oryctolagus cuniculus
ENSOCUG00000026495
N
0.767
CPSF4L
Monodelphis domestica
ENSMODG00000025672
N
0.762
CPSF4L
Macropus eugenii
ENSMEUG00000004051
N
0.725
CPSF4L
Loxodonta africana
ENSLAFG00000010697
N
0.797
CPSF4L
Gorilla gorilla
ENSGGOG00000026659
N
0.992
CPSF4L
Felis catus
ENSFCAG00000004745
N
0.800
CPSF4L
Callithrix jacchus
ENSCJAG00000019911
N
0.706
ENSPPYG00000008589
Pongo pygmaeus
ENSPPYG00000008589
N
0.990