CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Tupaia belangeri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTBEG00000004564
T03426_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000003924
CCCH ZF
1
19
YFMHGVCKEGDNCRYSHDL
ENSTBEP00000003924
CCCH ZF
23
48
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSTBEP00000003924
CCCH ZF
146
171
TKKQLCPYAAVGECRYGENCVYLHGD
Links
Other
CCCH ZF
family RBPs
Other
Tupaia belangeri
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A2VDX6_BOVIN
Bos taurus
ENSBTAG00000008306
N
0.972
ENSGGOG00000024940
Gorilla gorilla
ENSGGOG00000024940
N
0.795
MKRN1
Dasypus novemcinctus
ENSDNOG00000019564
N
0.910
MKRN1
Echinops telfairi
ENSETEG00000007348
N
0.972
MKRN1
Homo sapiens
ENSG00000133606
N
0.958
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.959
MKRN1
Pteropus vampyrus
ENSPVAG00000011185
N
0.897