CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A2VDX6_BOVIN
(
Bos taurus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSBTAG00000008306
T02254_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000010932
CCCH ZF
73
93
DRYFMHGVCKEGDNCRYSHDL
ENSBTAP00000010932
CCCH ZF
97
122
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSBTAP00000010932
CCCH ZF
220
245
TKKQLCPYAAVGECRYGENCAYLHGD
ENSBTAP00000040079
CCCH ZF
34
53
RYFMHGVCKEGDNCRYSHDL
ENSBTAP00000040079
CCCH ZF
57
82
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSBTAP00000040079
CCCH ZF
180
205
TKKQLCPYAAVGECRYGENCAYLHGD
Links
Other
CCCH ZF
family RBPs
Other
Bos taurus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Tupaia belangeri
ENSTBEG00000004564
N
0.972
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.959
MKRN1
Echinops telfairi
ENSETEG00000007348
N
0.944
MKRN1
Homo sapiens
ENSG00000133606
N
0.931
MKRN1
Dasypus novemcinctus
ENSDNOG00000019564
N
0.910
MKRN1
Pteropus vampyrus
ENSPVAG00000011185
N
0.897
ENSGGOG00000024940
Gorilla gorilla
ENSGGOG00000024940
N
0.795