Mkrn1 (Mus musculus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSMUSG00000029922 T02996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000031985 CCCH ZF 56 81
ENSMUSP00000031985 CCCH ZF 85 110
ENSMUSP00000031985 CCCH ZF 209 234
ENSMUSP00000031985 CCCH ZF 367 392
ENSMUSP00000084244 CCCH ZF 56 81
ENSMUSP00000084244 CCCH ZF 85 110
ENSMUSP00000084244 CCCH ZF 209 234
ENSMUSP00000110470 CCCH ZF 56 81
ENSMUSP00000110470 CCCH ZF 85 110
ENSMUSP00000110471 CCCH ZF 1 17
ENSMUSP00000110471 CCCH ZF 21 46
ENSMUSP00000110471 CCCH ZF 145 170
ENSMUSP00000110471 CCCH ZF 303 328
ENSMUSP00000115231 CCCH ZF 76 96
ENSMUSP00000115231 CCCH ZF 100 125
ENSMUSP00000115231 CCCH ZF 224 249
ENSMUSP00000123440 CCCH ZF 38 59
ENSMUSP00000123440 CCCH ZF 63 88

Links

Other CCCH ZF family RBPs
Other Mus musculus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.990
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.990
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.990
MKRN1 Dasypus novemcinctus ENSDNOG00000019564 N 0.987
MKRN1 Homo sapiens ENSG00000133606 N 0.981
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.981
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.981
MKRN1 Pteropus vampyrus ENSPVAG00000011185 N 0.974
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.971
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.971
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.971
ENSCAFG00000003953 Canis familiaris ENSCAFG00000003953 N 0.969
MKRN1 Felis catus ENSFCAG00000013043 N 0.969
LOC100065893 Equus caballus ENSECAG00000017929 N 0.959
Ame_R001963 Ailuropoda melanoleuca Ame_R001963 N 0.959
MKRN1 Tupaia belangeri ENSTBEG00000004564 N 0.959
A2VDX6_BOVIN Bos taurus ENSBTAG00000008306 N 0.959
ENSPPYG00000018057 Pongo pygmaeus ENSPPYG00000018057 N 0.959
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.952
ENSOCUG00000010180 Oryctolagus cuniculus ENSOCUG00000010180 N 0.949
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.949
MKRN1 Echinops telfairi ENSETEG00000007348 N 0.932
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.923
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.907
MKRN1 Tarsius syrichta ENSTSYG00000009996 N 0.907
ENSGGOG00000024940 Gorilla gorilla ENSGGOG00000024940 N 0.897
ENSOGAG00000009877 Otolemur garnettii ENSOGAG00000009877 N 0.897
MKRN1 Myotis lucifugus ENSMLUG00000006053 N 0.896
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.885
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.885
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.885
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.885
MKRN1 Sorex araneus ENSSARG00000013683 N 0.879
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.875
ENSMMUG00000001017 Macaca mulatta ENSMMUG00000001017 N 0.837
MKRN1 Callithrix jacchus ENSCJAG00000004068 N 0.837
MKRN1 Meleagris gallopavo ENSMGAG00000013208 N 0.827
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.810
MKRN1 Taeniopygia guttata ENSTGUG00000011669 N 0.806
AAH74368 Xenopus laevis AAH74368 N 0.788
Q6GLT5 Xenopus laevis Q6GLT5 N 0.788
mkrn1 Danio rerio ENSDARG00000041665 N 0.774
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.764
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.755
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.745