estExt_Genewise1.C_sca_750115 (Lottia gigantea)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_Genewise1.C_sca_750115 T05126_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_750115 CCCH ZF 74 96
estExt_Genewise1.C_sca_750115 CCCH ZF 268 294

Links

Other CCCH ZF family RBPs
Other Lottia gigantea RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
188708 Helobdella robusta 188708 N 0.760
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.840
AAEL012456 Aedes aegypti AAEL012456 N 0.840
AAH46725 Xenopus laevis AAH46725 N 0.880
AGAP000684 Anopheles gambiae AGAP000684 N 0.804
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.820
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.820
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.769
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.840
e_gw.394.2.1 Branchiostoma floridae e_gw.394.2.1 N 0.840
LOC100067623 Equus caballus ENSECAG00000010641 N 0.788
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.840
PHUM219250 Pediculus humanus PHUM219250 N 0.780
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.804
SNAPOd2T00019464001 Oikopleura dioica SNAPOd2T00019464001 N 0.800
UNK Ochotona princeps ENSOPRG00000012784 N 0.760
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.840
Unk Mus musculus ENSMUSG00000020770 N 0.800
UNK Monodelphis domestica ENSMODG00000007684 N 0.860
UNK Procavia capensis ENSPCAG00000004504 N 0.820
UNK Pan troglodytes ENSPTRG00000009656 N 0.840
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.840
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.840
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.880
UNK Takifugu rubripes ENSTRUG00000007192 N 0.800
UNK Tursiops truncatus ENSTTRG00000015890 N 0.820
UNK Sus scrofa ENSSSCG00000017201 N 0.840
unk Xenopus tropicalis ENSXETG00000012578 N 0.860
UNK Myotis lucifugus ENSMLUG00000015453 N 0.820
UNK Gasterosteus aculeatus ENSGACG00000005102 N 0.788
UNK Homo sapiens ENSG00000132478 N 0.840
UNK Anolis carolinensis ENSACAG00000007303 N 0.880
UNK Felis catus ENSFCAG00000005757 N 0.843
UNK Equus caballus ENSECAG00000024672 N 0.840
Unk Dipodomys ordii ENSDORG00000008133 N 0.840
unk Danio rerio ENSDARG00000000935 N 0.760
UNK Cavia porcellus ENSCPOG00000012679 N 0.840
UNK Gallus gallus ENSGALG00000002278 N 0.880
UNK Gorilla gorilla ENSGGOG00000009203 N 0.840
UNK Macropus eugenii ENSMEUG00000004094 N 0.860
UNK Macaca mulatta ENSMMUG00000013646 N 0.840
UNK Loxodonta africana ENSLAFG00000022662 N 0.840
UNK Meleagris gallopavo ENSMGAG00000004713 N 0.880
UNKL Monodelphis domestica ENSMODG00000016188 N 0.882
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.882
UNKL Cavia porcellus ENSCPOG00000011846 N 0.824
UNKL Gallus gallus ENSGALG00000006450 N 0.882
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.769
UNKL Bos taurus ENSBTAG00000014126 N 0.750
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.788
UNKL Danio rerio ENSDARG00000037838 N 0.902
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.863
Unkl Mus musculus ENSMUSG00000015127 N 0.820
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.843
UNKL Oryzias latipes ENSORLG00000005070 N 0.902
UNKL Loxodonta africana ENSLAFG00000018262 N 0.824
UNKL Homo sapiens ENSG00000059145 N 0.788
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.840