CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g44180
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g44180
T10966_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g44180.1
CCHC ZF
141
158
VDCFNCGEYGHYANNCPH
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA17545-RA
Drosophila pseudoobscura
FBgn0077556
N
0.000
GF13340
Drosophila ananassae
FBgn0090372
N
0.000
GJ21274
Drosophila virilis
FBgn0208406
N
0.000
GK21670
Drosophila willistoni
FBgn0223655
N
0.000
GL16773
Drosophila persimilis
FBgn0154377
N
0.000