CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os09g21640
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os09g21640
T12147_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os09g21640.1
CCHC ZF
432
449
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm44335
Apis mellifera
amel4_ncbi_hmm44335
N
0.000
BGIBMGA006328
Bombyx mori
BGIBMGA006328
N
0.000
CPIJ002709
Culex quinquefasciatus
CPIJ002709
N
0.000
CpipJ_CPIJ002709
Culex pipiens
CpipJ_CPIJ002709
N
0.000
DGIL_AUG5s5041g4t3
Acyrtosiphon pisum
DGIL_AUG5s5041g4t3
N
0.000
GA27251-RA
Drosophila pseudoobscura
FBgn0248619
N
0.000
GE23462
Drosophila yakuba
FBgn0240644
N
0.000
GF16118
Drosophila ananassae
FBgn0093140
N
0.000
GG11270
Drosophila erecta
FBgn0103571
N
0.000
GH18670
Drosophila grimshawi
FBgn0126137
N
0.000
GJ10528
Drosophila virilis
FBgn0197808
N
0.000
GK11389
Drosophila willistoni
FBgn0213400
N
0.000
mask
Drosophila melanogaster
FBgn0043884
N
0.000
PHUM473040
Pediculus humanus
PHUM473040
N
0.000