CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GG11270
(
Drosophila erecta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0103571
T19845_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0129816
KH
3033
3095
CKKVQVPVNAISRVIGRGGSNINAIRATTGAHIEVEKQGKNQSERCITIKGLTDATKQAHMLI
Links
Other
KH
family RBPs
Other
Drosophila erecta
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE23462
Drosophila yakuba
FBgn0240644
N
1.000
GF16118
Drosophila ananassae
FBgn0093140
N
1.000
mask
Drosophila melanogaster
FBgn0043884
N
1.000
GA27251-RA
Drosophila pseudoobscura
FBgn0248619
N
1.000
GK11389
Drosophila willistoni
FBgn0213400
N
0.984
GH18670
Drosophila grimshawi
FBgn0126137
N
0.968
GJ10528
Drosophila virilis
FBgn0197808
N
0.968
PHUM473040
Pediculus humanus
PHUM473040
N
0.825
CPIJ002709
Culex quinquefasciatus
CPIJ002709
N
0.810
AGAP003519
Anopheles gambiae
AGAP003519
N
0.810
amel4_ncbi_hmm44335
Apis mellifera
amel4_ncbi_hmm44335
N
0.810
CpipJ_CPIJ002709
Culex pipiens
CpipJ_CPIJ002709
N
0.810
DGIL_AUG5s5041g4t3
Acyrtosiphon pisum
DGIL_AUG5s5041g4t3
N
0.778
BGIBMGA006328
Bombyx mori
BGIBMGA006328
N
0.730