CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPPG_01752
(
Spizellomyces punctatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPPG_01752
T30806_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPPG_01752T0
RRM
35
105
VFVGGIPYELTEGDLIAVFSQYGEIVDLNLVRDKQSGKSKGFAFVAFEDQRSTTLAVDNFNGIKILNRTIR
Links
Other
RRM
family RBPs
Other
Spizellomyces punctatus
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL002461
Aedes aegypti
AAEL002461
N
0.716
AAH56844
Xenopus laevis
AAH56844
N
0.718
CAOG_00327
Capsaspora owczarzaki
CAOG_00327
N
0.703
CPIJ015641
Culex quinquefasciatus
CPIJ015641
N
0.746
CpipJ_CPIJ015641
Culex pipiens
CpipJ_CPIJ015641
N
0.746
ENSMLUG00000017095
Myotis lucifugus
ENSMLUG00000017095
N
0.703
ENSOCUG00000020937
Oryctolagus cuniculus
ENSOCUG00000020937
N
0.761
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.743
e_gwW.26.138.1
Chlamydomonas reinhardtii
e_gwW.26.138.1
N
0.716
LOAG_03303
Loa loa
LOAG_03303
N
0.718
PHUM617480
Pediculus humanus
PHUM617480
N
0.703
RBMX2
Takifugu rubripes
ENSTRUG00000001699
N
0.716
RBMX2
Tetraodon nigroviridis
ENSTNIG00000007672
N
0.703
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.730
RBMX2
Gasterosteus aculeatus
ENSGACG00000001855
N
0.730
rbmx2
Danio rerio
ENSDARG00000044380
N
0.716
RBMX2
Anolis carolinensis
ENSACAG00000008819
N
0.720
Rbmx2
Mus musculus
ENSMUSG00000031107
N
0.707
Sjc_0109550
Schistosoma japonicum
Sjc_0109550
N
0.704
Smp_170230
Schistosoma mansoni
Smp_170230
N
0.704
XM_001377711.1
Monodelphis domestica
ENSMODG00000012002
N
0.720