CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBMX2
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000001855
T37391_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000002407
RRM
38
108
VFVGGFPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFICFEDQRSTILVVDNLNGIKIKGRTIR
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
93 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBMX2
Anolis carolinensis
ENSACAG00000008819
N
0.917
RBMX2
Takifugu rubripes
ENSTRUG00000001699
N
0.915
rbmx2
Danio rerio
ENSDARG00000044380
N
0.915
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.901
RBMX2
Tetraodon nigroviridis
ENSTNIG00000007672
N
0.901
XM_001377711.1
Monodelphis domestica
ENSMODG00000012002
N
0.889
ENSMLUG00000017095
Myotis lucifugus
ENSMLUG00000017095
N
0.887
Rbmx2
Mus musculus
ENSMUSG00000031107
N
0.875
ENSOGAG00000006237
Otolemur garnettii
ENSOGAG00000006237
N
0.875
RBMX2
Macaca mulatta
ENSMMUG00000008389
N
0.875
RBMX2
Tursiops truncatus
ENSTTRG00000016210
N
0.875
ENSMLUG00000010298
Myotis lucifugus
ENSMLUG00000010298
N
0.875
RBMX2
Gorilla gorilla
ENSGGOG00000023687
N
0.875
RBMX2
Pteropus vampyrus
ENSPVAG00000004425
N
0.875
Ame_R006638
Ailuropoda melanoleuca
Ame_R006638
N
0.875
LOC100388331
Callithrix jacchus
ENSCJAG00000002436
N
0.875
LOC100058600
Equus caballus
ENSECAG00000008257
N
0.875
RBMX2
Microcebus murinus
ENSMICG00000015139
N
0.875
RBMX2
Homo sapiens
ENSG00000134597
N
0.875
XP_001110036.1
Macaca mulatta
ENSMMUG00000020845
N
0.861
ENSGGOG00000016146
Gorilla gorilla
ENSGGOG00000016146
N
0.861
ENSMODG00000019800
Monodelphis domestica
ENSMODG00000019800
N
0.861
RBMX2
Macropus eugenii
ENSMEUG00000010913
N
0.861
RBMX2
Cavia porcellus
ENSCPOG00000006640
N
0.861
Rbmx2
Rattus norvegicus
ENSRNOG00000007371
N
0.861
ENSLAFG00000028277
Loxodonta africana
ENSLAFG00000028277
N
0.859
RBMX2
Canis familiaris
ENSCAFG00000018770
N
0.851
RBMX2
Spermophilus tridecemlineatus
ENSSTOG00000015391
N
0.847
RBMX2
Echinops telfairi
ENSETEG00000001763
N
0.847
XR_023755.1
Pan troglodytes
ENSPTRG00000022269
N
0.847
ENSPPYG00000020717
Pongo pygmaeus
ENSPPYG00000020717
N
0.847
RBMX2
Sorex araneus
ENSSARG00000007350
N
0.845
RBMX2
Loxodonta africana
ENSLAFG00000017625
N
0.838
RBMX2
Oryctolagus cuniculus
ENSOCUG00000011809
N
0.836
ENSGGOG00000026106
Gorilla gorilla
ENSGGOG00000026106
N
0.833
RBMX2
Gallus gallus
ENSGALG00000004025
N
0.833
RBMX2
Erinaceus europaeus
ENSEEUG00000000839
N
0.833
RBMX2
Procavia capensis
ENSPCAG00000012903
N
0.833
ENSOGAG00000009060
Otolemur garnettii
ENSOGAG00000009060
N
0.833
GJ13600
Drosophila virilis
FBgn0200822
N
0.817
PHUM617480
Pediculus humanus
PHUM617480
N
0.817
GL26176
Drosophila persimilis
FBgn0163758
N
0.817
GK14925
Drosophila willistoni
FBgn0216930
N
0.817
XP_791635.2
Strongylocentrotus purpuratus
XP_791635.2
N
0.817
GA10331-RA
Drosophila pseudoobscura
FBgn0070389
N
0.817
XP_001180915.1
Strongylocentrotus purpuratus
XP_001180915.1
N
0.817
GF14433
Drosophila ananassae
FBgn0091460
N
0.817
LOC613705
Bos taurus
ENSBTAG00000014771
N
0.817
estExt_fgenesh2_pg.C_1800064
Branchiostoma floridae
estExt_fgenesh2_pg.C_1800064
N
0.817
AAEL002461
Aedes aegypti
AAEL002461
N
0.817
LOC534630
Bos taurus
ENSBTAG00000006252
N
0.817
RBMX2
Meleagris gallopavo
ENSMGAG00000001801
N
0.806
CAOG_00327
Capsaspora owczarzaki
CAOG_00327
N
0.803
gw1.462.53.1
Capitella teleta
gw1.462.53.1
N
0.803
nasonia_NCBI_hmm382923
Nasonia vitripennis
nasonia_NCBI_hmm382923
N
0.803
ENSMODG00000011981
Monodelphis domestica
ENSMODG00000011981
N
0.803
GG21207
Drosophila erecta
FBgn0113387
N
0.803
GI11260
Drosophila mojavensis
FBgn0134021
N
0.803
GI11259
Drosophila mojavensis
FBgn0134020
N
0.803
GI20215
Drosophila mojavensis
FBgn0142951
N
0.803
ENSOCUG00000020937
Oryctolagus cuniculus
ENSOCUG00000020937
N
0.797
RBMX2
Ornithorhynchus anatinus
ENSOANG00000001362
N
0.797
AGAP000977
Anopheles gambiae
AGAP000977
N
0.789
GD24233
Drosophila simulans
FBgn0195582
N
0.789
GE13281
Drosophila yakuba
FBgn0230967
N
0.789
Aqu1.200557
Amphimedon queenslandica
Aqu1.200557
N
0.789
GM17378
Drosophila sechellia
FBgn0172288
N
0.789
GH13830
Drosophila grimshawi
FBgn0121306
N
0.789
RBMX2
Tarsius syrichta
ENSTSYG00000010611
N
0.789
CG10466
Drosophila melanogaster
FBgn0032822
N
0.789
Aqu1.228439
Amphimedon queenslandica
Aqu1.228439
N
0.789
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.789
ENSCSAVG00000001047
Ciona savignyi
ENSCSAVG00000001047
N
0.775
XP_002164481.1
Hydra magnipapillata
XP_002164481.1
N
0.775
ENSMMUG00000001001
Macaca mulatta
ENSMMUG00000001001
N
0.764
ISCW009356
Ixodes scapularis
ISCW009356
N
0.761
gw.130.169.1
Nematostella vectensis
gw.130.169.1
N
0.761
CPIJ015641
Culex quinquefasciatus
CPIJ015641
N
0.757
CpipJ_CPIJ015641
Culex pipiens
CpipJ_CPIJ015641
N
0.757
145168
Helobdella robusta
145168
N
0.746
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.746
fgenesh2_pg.C_sca_10000115
Lottia gigantea
fgenesh2_pg.C_sca_10000115
N
0.746
AAH56844
Xenopus laevis
AAH56844
N
0.743
RBMX2
Taeniopygia guttata
ENSTGUG00000005239
N
0.736
PredSwiss_CON1238.1
Pneumocystis carinii
PredSwiss_CON1238.1
N
0.732
SPPG_01752
Spizellomyces punctatus
SPPG_01752
N
0.730
Bm1_02690
Brugia malayi
Bm1_02690
N
0.718
WUBG_13107
Wuchereria bancrofti
WUBG_13107
N
0.718
PITG_06351
Phytophthora infestans
PITG_06351
N
0.718
gw1.1.2244.1
Trichoplax adhaerens
gw1.1.2244.1
N
0.718
Sjc_0109550
Schistosoma japonicum
Sjc_0109550
N
0.716
Smp_170230
Schistosoma mansoni
Smp_170230
N
0.716
DGIL_AUG5s13597g2t1
Acyrtosiphon pisum
DGIL_AUG5s13597g2t1
N
0.704