CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_06648
(
Verticillium dahliae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDAG_06648
T31416_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_06648T0
RRM
113
167
ERKLHFSCLGTRRAADTIFQQKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIR
VDAG_06648T0
RRM
188
258
IFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR
VDAG_06648T0
RRM
314
378
VYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMESHEAAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Verticillium dahliae
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.701
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.817
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.706
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.706
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.719
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.729
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.706
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.706
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.733
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.738
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.738
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.724
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.733
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.733
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.742
NCU07874
Neurospora crassa
NCU07874
N
0.719
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.710
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.747