CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
FGSG_05417
(
Fusarium graminearum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FGSG_05417
T29231_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FGSG_05417T0
RRM
84
152
LYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLNGRRVHQSVP
FGSG_05417T0
RRM
176
246
IFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIR
FGSG_05417T0
RRM
302
366
VYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMDSHENAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Fusarium graminearum
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.976
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.976
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.956
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.947
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.942
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.942
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.927
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.922
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.918
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.913
NCU07874
Neurospora crassa
NCU07874
N
0.908
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.908
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.899
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.879
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.875
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.874
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.870
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.870
MCYG_03737
Microsporum canis
MCYG_03737
N
0.861
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.856
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.856
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.856
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.856
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.856
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.856
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.855
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.852
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.851
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.847
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.846
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.846
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.846
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.842
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.842
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.840
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.817
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.817
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.812
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.812
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.812
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.778
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.754
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.724
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.718
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.707