CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pa_7_10990
(
Podospora anserina
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pa_7_10990
T57947_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_7_10990
RRM
90
159
LYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSAERAMQTLNGRRVHQAEIR
Pa_7_10990
RRM
180
250
IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIR
Pa_7_10990
RRM
306
370
CYVGNLTPYTTQNDLVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Podospora anserina
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.981
NCU07874
Neurospora crassa
NCU07874
N
0.971
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.956
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.952
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.951
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.947
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.942
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.942
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.942
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.933
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.932
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.932
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.932
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.928
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.927
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.927
MCYG_03737
Microsporum canis
MCYG_03737
N
0.918
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.918
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.918
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.913
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.913
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.913
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.909
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.900
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.900
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.899
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.896
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.895
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.894
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.890
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.889
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.889
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.889
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.885
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.885
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.869
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.869
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.864
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.864
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.854
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.820
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.791
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.769
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.755
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.710