CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.32.97.1
(
Trichoderma virens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.32.97.1
T49956_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.32.97.1
RRM
79
148
LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIR
e_gw1.32.97.1
RRM
169
239
IFVGDLSNEVNDDILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR
e_gw1.32.97.1
RRM
295
359
CYVGNLTPYTTPNDVVPLFQNFGFVVESRFQADRGFAFIKMDTHENAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Trichoderma virens
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.985
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.985
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.976
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.976
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.966
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.966
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.947
NCU07874
Neurospora crassa
NCU07874
N
0.947
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.942
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.942
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.937
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.932
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.927
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.918
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.913
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.908
MCYG_03737
Microsporum canis
MCYG_03737
N
0.899
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.895
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.894
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.894
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.894
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.894
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.894
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.891
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.890
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.890
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.890
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.885
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.885
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.885
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.880
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.877
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.876
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.875
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.861
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.854
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.854
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.850
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.850
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.840
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.807
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.783
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.738
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.737
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.736