CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_08449
(
Colletotrichum graminicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GLRG_08449
T29431_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_08449T0
RRM
89
158
LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIR
GLRG_08449T0
RRM
179
249
IFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR
GLRG_08449T0
RRM
305
369
CYVGNLTPYTTPNDVVPLFQNFGYVVESRFQADRGFAFIKMDSHESAAMAICQMNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Colletotrichum graminicola
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.976
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.976
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.971
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.956
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.951
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.951
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.947
NCU07874
Neurospora crassa
NCU07874
N
0.942
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.932
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.932
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.928
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.923
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.923
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.913
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.909
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.903
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.900
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.900
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.899
MCYG_03737
Microsporum canis
MCYG_03737
N
0.894
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.894
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.890
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.889
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.889
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.889
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.886
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.885
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.885
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.880
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.880
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.880
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.876
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.875
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.873
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.870
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.850
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.850
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.845
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.845
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.836
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.807
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.768
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.742
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.732
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.731