CBG15152 (Caenorhabditis briggsae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBG15152 T33920_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.716
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBG15152 RRM 177 251
CBG15152 RRM 284 353
CBG15152 RRM 409 473

Links

Other RRM family RBPs
Other Caenorhabditis briggsae RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr4.CM0229.340.nc Lotus japonicus chr4.CM0229.340.nc N 0.000
CpipJ_CPIJ009289 Culex pipiens CpipJ_CPIJ009289 N 0.000
Glyma11g04990.1 Glycine max Glyma11g04990.1 N 0.000
Glyma13g21780.1 Glycine max Glyma13g21780.1 N 0.000
GSVIVG00021646001 Vitis vinifera GSVIVG00021646001 N 0.000
MDP0000148325 Malus x domestica MDP0000148325 N 0.000
SPPG_00438 Spizellomyces punctatus SPPG_00438 N 0.000
SPPG_01770 Spizellomyces punctatus SPPG_01770 N 0.000
SPPG_03316 Spizellomyces punctatus SPPG_03316 N 0.000
SPPG_03725 Spizellomyces punctatus SPPG_03725 N 0.000
SPPG_03727 Spizellomyces punctatus SPPG_03727 N 0.000
SPPG_06303 Spizellomyces punctatus SPPG_06303 N 0.000
SPPG_08024 Spizellomyces punctatus SPPG_08024 N 0.000
SPPG_08320 Spizellomyces punctatus SPPG_08320 N 0.000
SPPG_08560 Spizellomyces punctatus SPPG_08560 N 0.000
SPPG_08561 Spizellomyces punctatus SPPG_08561 N 0.000
SPPG_08805 Spizellomyces punctatus SPPG_08805 N 0.000
SPPG_08808 Spizellomyces punctatus SPPG_08808 N 0.000