CBG15152 (Caenorhabditis briggsae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBG15152 T33920_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.716
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBG15152 RRM 177 251
CBG15152 RRM 284 353
CBG15152 RRM 409 473

Links

Other RRM family RBPs
Other Caenorhabditis briggsae RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL002818 Aedes aegypti AAEL002818 I 0.744
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.739
AGAP002908 Anopheles gambiae AGAP002908 I 0.739
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.739
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.739
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.730
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.725
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.720
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.720
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.720
GL15893 Drosophila persimilis FBgn0153497 I 0.716
GG19328 Drosophila erecta FBgn0111532 I 0.716
GF19596 Drosophila ananassae FBgn0096603 I 0.716
GM13406 Drosophila sechellia FBgn0168337 I 0.716
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.716
U2af50 Drosophila melanogaster FBgn0005411 D 0.716
PHUM460480 Pediculus humanus PHUM460480 I 0.716
GE15975 Drosophila yakuba FBgn0233531 I 0.716
GK10063 Drosophila willistoni FBgn0212078 I 0.716
GD24494 Drosophila simulans FBgn0195829 I 0.716
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.716
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.711
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.711
U2AF2 Homo sapiens ENSG00000063244 D 0.711
LOC100050729 Equus caballus ENSECAG00000010110 I 0.711
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.711
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.711
U2af2 Mus musculus ENSMUSG00000030435 I 0.711
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.711
GH12033 Drosophila grimshawi FBgn0119512 I 0.711
GI14308 Drosophila mojavensis FBgn0137061 I 0.711
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.711
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.711
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.711
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.706
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.706
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.706
AAH44032 Xenopus laevis AAH44032 I 0.706
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.706
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.706
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.706
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.701
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.701
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.701