U2af50 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0005411 T43000_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6		 Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M078_0.6 RRM 51 125
M078_0.6 RRM 165 235
M078_0.6 RRM 297 358

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0074013 RRM 95 169
FBpp0074013 RRM 209 279
FBpp0074013 RRM 341 402
FBpp0298005 RRM 106 180
FBpp0298005 RRM 220 290
FBpp0298005 RRM 352 413
FBpp0298006 RRM 39 113
FBpp0298006 RRM 153 223
FBpp0298006 RRM 285 346
FBpp0298007 RRM 95 169
FBpp0298007 RRM 209 279
FBpp0298007 RRM 341 402

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GD24494 Drosophila simulans FBgn0195829 I 1.000
GK10063 Drosophila willistoni FBgn0212078 I 1.000
GE15975 Drosophila yakuba FBgn0233531 I 1.000
GM13406 Drosophila sechellia FBgn0168337 I 1.000
GL15893 Drosophila persimilis FBgn0153497 I 1.000
GF19596 Drosophila ananassae FBgn0096603 I 1.000
GG19328 Drosophila erecta FBgn0111532 I 1.000
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 1.000
GH12033 Drosophila grimshawi FBgn0119512 I 0.990
GI14308 Drosophila mojavensis FBgn0137061 I 0.990
GJ19364 Drosophila virilis FBgn0206507 I 0.933
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.928
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.928
AAEL002818 Aedes aegypti AAEL002818 I 0.928
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.923
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.913
AGAP002908 Anopheles gambiae AGAP002908 I 0.909
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.909
PHUM460480 Pediculus humanus PHUM460480 I 0.885
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.870
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.870
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.832
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.817
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.803
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.803
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.798
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.798
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.798
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.798
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.798
U2AF2 Homo sapiens ENSG00000063244 D 0.798
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.798
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.798
AAH44032 Xenopus laevis AAH44032 I 0.798
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.798
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.798
U2af2 Mus musculus ENSMUSG00000030435 I 0.798
LOC100050729 Equus caballus ENSECAG00000010110 I 0.798
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.793
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.790
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.786
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.784
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.779
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.779
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.779
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.779
u2af2a Danio rerio ENSDARG00000012505 I 0.774
u2af2b Danio rerio ENSDARG00000011740 I 0.769
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.752
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.737
185543 Helobdella robusta 185543 I 0.735
Smp_019690 Schistosoma mansoni Smp_019690 I 0.731
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.727
CBG15152 Caenorhabditis briggsae CBG15152 I 0.716