CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NONO
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000015026
T34718_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NONO
M309_0.6
Homo sapiens
Sequence logo not available
GAGAGGAAC
SELEX
Cook et al.(2011)
490_12403470
0.917
NONO
M307_0.6
Homo sapiens
AGGGA
SELEX
Cook et al.(2011)
488_9001221
0.917
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000014814
RRM
73
134
LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPRGKQ
ENSACAP00000014814
RRM
146
211
LTVRNLPQFVSNELLEEAFSMFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCGEGSFLL
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
46 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH45128
Xenopus laevis
AAH45128
I
0.802
BAE54372
Xenopus laevis
BAE54372
I
0.802
ENSTNIG00000011331
Tetraodon nigroviridis
ENSTNIG00000011331
I
0.725
ENSTRUG00000003783
Takifugu rubripes
ENSTRUG00000003783
I
0.733
nono
Danio rerio
ENSDARG00000020482
I
0.725
NONO
Gasterosteus aculeatus
ENSGACG00000011824
I
0.000
NONO
Takifugu rubripes
ENSTRUG00000005554
I
0.000
nono
Xenopus tropicalis
ENSXETG00000020868
I
0.786