ENSTNIG00000011331 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000011331 T42096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.872
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.872
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.735
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014274 RRM 195 259
ENSTNIP00000014274 RRM 269 334

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.985
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.925
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.908
sfpq Danio rerio ENSDARG00000011564 I 0.878
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.872
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.872
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.872
SFPQ Echinops telfairi ENSETEG00000001095 I 0.872
SFPQ Bos taurus ENSBTAG00000016328 I 0.872
Sfpq Mus musculus ENSMUSG00000028820 I 0.872
LOC100069588 Equus caballus ENSECAG00000000642 I 0.872
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.872
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.872
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.872
SFPQ Procavia capensis ENSPCAG00000006164 I 0.872
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.872
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.872
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.872
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.872
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.872
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.872
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.872
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.872
SFPQ Homo sapiens ENSG00000116560 D 0.872
SFPQ Microcebus murinus ENSMICG00000011755 I 0.872
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.871
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.871
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.857
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.857
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.856
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.855
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.850
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.850
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.842
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.833
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.833
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.812
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.802
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.786
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.786
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.786
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.779
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.779
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.779
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.779
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.773
Pspc1 Mus musculus ENSMUSG00000021938 I 0.771
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.771
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.771
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.771
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.771
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.771
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.771
PSPC1 Sorex araneus ENSSARG00000000888 I 0.771
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.771
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.771
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.771
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.771
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.771
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.771
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.771
PSPC1 Homo sapiens ENSG00000121390 I 0.771
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.771
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.763
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.748
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.748
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.748
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.748
NONO Monodelphis domestica ENSMODG00000004445 I 0.742
BAE54372 Xenopus laevis BAE54372 I 0.740
AAH45128 Xenopus laevis AAH45128 I 0.740
PSPC1 Felis catus ENSFCAG00000013701 I 0.740
NONO Macropus eugenii ENSMEUG00000004294 I 0.737
NONO Procavia capensis ENSPCAG00000002541 I 0.735
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.735
NONO Loxodonta africana ENSLAFG00000013422 I 0.735
Nono Rattus norvegicus ENSRNOG00000003689 I 0.735
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.735
NONO Otolemur garnettii ENSOGAG00000004834 I 0.735
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.735
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.735
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.735
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.735
NONO Vicugna pacos ENSVPAG00000002272 I 0.735
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.735
NONO Gorilla gorilla ENSGGOG00000006194 I 0.735
NONO Microcebus murinus ENSMICG00000000232 I 0.735
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.735
NONO Tursiops truncatus ENSTTRG00000009605 I 0.735
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.735
NONO Equus caballus ENSECAG00000008502 I 0.735
Nono Mus musculus ENSMUSG00000031311 I 0.735
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.735
NONO Homo sapiens ENSG00000147140 D 0.735
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.735
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.735
NONO Oryzias latipes ENSORLG00000012801 N 0.733
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.733
nono Xenopus tropicalis ENSXETG00000020868 I 0.733
NONO Sorex araneus ENSSARG00000007959 I 0.727
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.727
NONO Anolis carolinensis ENSACAG00000015026 I 0.725
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.725
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.722
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.720
pspc1 Danio rerio ENSDARG00000006621 N 0.718
nono Danio rerio ENSDARG00000020482 I 0.710
NONO Takifugu rubripes ENSTRUG00000005554 I 0.710
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.705
NONO Myotis lucifugus ENSMLUG00000002489 I 0.705