BAE54372 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BAE54372 T59679_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.833
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.833
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.714
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BAE54372 RRM 69 133
BAE54372 RRM 143 207

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH45128 Xenopus laevis AAH45128 I 1.000
nono Xenopus tropicalis ENSXETG00000020868 I 0.954
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.863
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.863
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.863
NONO Monodelphis domestica ENSMODG00000004445 I 0.841
NONO Macropus eugenii ENSMEUG00000004294 I 0.835
NONO Procavia capensis ENSPCAG00000002541 I 0.833
NONO Otolemur garnettii ENSOGAG00000004834 I 0.833
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.833
NONO Equus caballus ENSECAG00000008502 I 0.833
NONO Homo sapiens ENSG00000147140 D 0.833
NONO Microcebus murinus ENSMICG00000000232 I 0.833
Nono Mus musculus ENSMUSG00000031311 I 0.833
NONO Loxodonta africana ENSLAFG00000013422 I 0.833
NONO Gorilla gorilla ENSGGOG00000006194 I 0.833
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.833
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.833
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.833
Nono Rattus norvegicus ENSRNOG00000003689 I 0.833
NONO Vicugna pacos ENSVPAG00000002272 I 0.833
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.833
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.833
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.833
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.833
NONO Tursiops truncatus ENSTTRG00000009605 I 0.833
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.833
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.833
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.833
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.833
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.826
NONO Sorex araneus ENSSARG00000007959 I 0.826
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.820
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.811
NONO Myotis lucifugus ENSMLUG00000002489 I 0.803
NONO Anolis carolinensis ENSACAG00000015026 I 0.802
nono Danio rerio ENSDARG00000020482 I 0.777
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.763
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.762
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.748
NONO Oryzias latipes ENSORLG00000012801 N 0.746
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.740
NONO Gasterosteus aculeatus ENSGACG00000011824 I 0.738
NONO Takifugu rubripes ENSTRUG00000005554 I 0.731
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.720
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.720
sfpq Danio rerio ENSDARG00000011564 I 0.715
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.714
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.714
Sfpq Mus musculus ENSMUSG00000028820 I 0.714
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.714
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.714
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.714
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.714
SFPQ Microcebus murinus ENSMICG00000011755 I 0.714
SFPQ Bos taurus ENSBTAG00000016328 I 0.714
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.714
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.714
SFPQ Homo sapiens ENSG00000116560 D 0.714
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.714
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.714
LOC100069588 Equus caballus ENSECAG00000000642 I 0.714
SFPQ Procavia capensis ENSPCAG00000006164 I 0.714
SFPQ Echinops telfairi ENSETEG00000001095 I 0.714
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.714
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.714
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.714
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.714
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.707
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.707
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.707
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.705
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.702
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.702
pspc1 Danio rerio ENSDARG00000006621 N 0.700