CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NONO
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000015026
T34718_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NONO
M309_0.6
Homo sapiens
Sequence logo not available
GAGAGGAAC
SELEX
Cook et al.(2011)
490_12403470
0.917
NONO
M307_0.6
Homo sapiens
AGGGA
SELEX
Cook et al.(2011)
488_9001221
0.917
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000014814
RRM
73
134
LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPRGKQ
ENSACAP00000014814
RRM
146
211
LTVRNLPQFVSNELLEEAFSMFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCGEGSFLL
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
46 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NONO
Monodelphis domestica
ENSMODG00000004445
I
0.924
NONO
Macropus eugenii
ENSMEUG00000004294
I
0.917
ENSOCUG00000021848
Oryctolagus cuniculus
ENSOCUG00000021848
I
0.917
NONO
Otolemur garnettii
ENSOGAG00000004834
I
0.917
Nono
Mus musculus
ENSMUSG00000031311
I
0.917
Q2KJ42_BOVIN
Bos taurus
ENSBTAG00000012152
I
0.917
NONO
Microcebus murinus
ENSMICG00000000232
I
0.917
NONO
Procavia capensis
ENSPCAG00000002541
I
0.917
ENSPPYG00000020451
Pongo pygmaeus
ENSPPYG00000020451
I
0.917
NONO
Vicugna pacos
ENSVPAG00000002272
I
0.917
Ame_R017809
Ailuropoda melanoleuca
Ame_R017809
I
0.917
NONO
Tursiops truncatus
ENSTTRG00000009605
I
0.917
Nono
Rattus norvegicus
ENSRNOG00000003689
I
0.917
XR_025068.1
Pan troglodytes
ENSPTRG00000022010
I
0.917
NONO
Pteropus vampyrus
ENSPVAG00000016503
I
0.917
NONO
Loxodonta africana
ENSLAFG00000013422
I
0.917
LOC697263
Macaca mulatta
ENSMMUG00000020481
I
0.917
ENSCPOG00000010263
Cavia porcellus
ENSCPOG00000010263
I
0.917
NONO
Equus caballus
ENSECAG00000008502
I
0.917
NONO
Gorilla gorilla
ENSGGOG00000006194
I
0.917
ENSCAFG00000017071
Canis familiaris
ENSCAFG00000017071
I
0.917
LOC607081
Canis familiaris
ENSCAFG00000003207
I
0.917
NONO
Erinaceus europaeus
ENSEEUG00000014404
I
0.917
TAF1
Callithrix jacchus
ENSCJAG00000013390
I
0.917
NONO
Homo sapiens
ENSG00000147140
D
0.917
NONO
Taeniopygia guttata
ENSTGUG00000007048
I
0.916
NONO
Meleagris gallopavo
ENSMGAG00000008869
I
0.916
Q5ZIZ5_CHICK
Gallus gallus
ENSGALG00000005507
I
0.916
ENSCPOG00000023605
Cavia porcellus
ENSCPOG00000023605
I
0.909
NONO
Sorex araneus
ENSSARG00000007959
I
0.909
NONO
Spermophilus tridecemlineatus
ENSSTOG00000015869
I
0.902
ENSCJAG00000003136
Callithrix jacchus
ENSCJAG00000003136
I
0.886
NONO
Myotis lucifugus
ENSMLUG00000002489
I
0.886
ENSCAFG00000013766
Canis familiaris
ENSCAFG00000013766
I
0.832
AAH45128
Xenopus laevis
AAH45128
I
0.802
BAE54372
Xenopus laevis
BAE54372
I
0.802
nono
Xenopus tropicalis
ENSXETG00000020868
I
0.786
ENSCPOG00000026604
Cavia porcellus
ENSCPOG00000026604
I
0.740
sfpq
Xenopus tropicalis
ENSXETG00000009682
I
0.733
ENSTRUG00000003783
Takifugu rubripes
ENSTRUG00000003783
I
0.733
nono
Danio rerio
ENSDARG00000020482
I
0.725
ENSTNIG00000011331
Tetraodon nigroviridis
ENSTNIG00000011331
I
0.725
ENSORLG00000007459
Oryzias latipes
ENSORLG00000007459
I
0.710
Nono
Dipodomys ordii
ENSDORG00000009294
I
0.705
SFPQ
Taeniopygia guttata
ENSTGUG00000001722
I
0.705
Q91017_CHICK
Gallus gallus
ENSGALG00000002514
I
0.705