CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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THOC4
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000005877
T35035_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000008786
RRM
30
99
LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30169.m006527
Ricinus communis
30169.m006527
I
0.000
ATPTB2
Arabidopsis thaliana
AT5G53180-TAIR-G
I
0.000
cassava29285.valid.m1
Manihot esculenta
cassava29285.valid.m1
I
0.000
cassava7218.valid.m1
Manihot esculenta
cassava7218.valid.m1
I
0.000
cassava7219.valid.m1
Manihot esculenta
cassava7219.valid.m1
I
0.000
Cucsa.202010
Cucumis sativus
Cucsa.202010
I
0.000
Glyma04g41660.1
Glycine max
Glyma04g41660.1
I
0.000
Glyma06g13130.1
Glycine max
Glyma06g13130.1
I
0.000
Glyma13g08170.1
Glycine max
Glyma13g08170.1
I
0.000
Glyma14g30490.1
Glycine max
Glyma14g30490.1
I
0.000
GSVIVG00028703001
Vitis vinifera
GSVIVG00028703001
I
0.000
MDP0000236223
Malus x domestica
MDP0000236223
N
0.000
MDP0000269393
Malus x domestica
MDP0000269393
I
0.000
Medtr3g124540
Medicago truncatula
Medtr3g124540
I
0.000
mgf001230m
Mimulus guttatus
mgf001230m
I
0.000
mgf005649m
Mimulus guttatus
mgf005649m
I
0.000
PDK_20s1513061g004
Phoenix dactylifera
PDK_20s1513061g004
I
0.000
ppa005791m
Prunus persica
ppa005791m
I
0.000
XM_002865910.1
Arabidopsis lyrata
fgenesh2_kg.8__1206__AT5G53180.1
I
0.000