cassava7219.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava7219.valid.m1 T49466_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7219.valid.m1 RRM 20 78
cassava7219.valid.m1 RRM 124 181
cassava7219.valid.m1 RRM 249 311

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 1.000
30169.m006527 Ricinus communis 30169.m006527 I 0.972
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.956
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.956
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.956
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.956
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.950
ppa005791m Prunus persica ppa005791m I 0.950
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.944
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.934
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.933
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.922
MDP0000269393 Malus x domestica MDP0000269393 I 0.911
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.906
mgf005649m Mimulus guttatus mgf005649m I 0.896
mgf001230m Mimulus guttatus mgf001230m I 0.863
MDP0000236223 Malus x domestica MDP0000236223 N 0.833
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.819
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.809
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.809
MDP0000274672 Malus x domestica MDP0000274672 N 0.800
28649.m000223 Ricinus communis 28649.m000223 I 0.798
SB03G028150 Sorghum bicolor Sb03g028150 I 0.797
ppa004961m Prunus persica ppa004961m I 0.794
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.794
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.793
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.789
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.789
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.788
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.786
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.784
PK14390.1 Cannabis sativa PK14390.1 I 0.783
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.782
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.780
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.780
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.777
SB07G021250 Sorghum bicolor Sb07g021250 I 0.774
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.774
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.772
MDP0000796160 Malus x domestica MDP0000796160 I 0.772
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.772
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.762
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.755
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.745
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.739
SB01G034060 Sorghum bicolor Sb01g034060 I 0.735
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.714
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.704