mgf001230m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf001230m T53581_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf001230m RRM 20 78
mgf001230m RRM 122 182
mgf001230m RRM 248 310

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf005649m Mimulus guttatus mgf005649m I 0.896
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.880
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.880
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.874
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.874
ppa005791m Prunus persica ppa005791m I 0.863
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.863
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.863
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.863
30169.m006527 Ricinus communis 30169.m006527 I 0.863
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.858
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.858
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.858
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.836
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.831
MDP0000269393 Malus x domestica MDP0000269393 I 0.825
MDP0000236223 Malus x domestica MDP0000236223 N 0.770
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.762
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.761
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.755
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.755
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.745
MDP0000274672 Malus x domestica MDP0000274672 N 0.743
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.741
SB03G028150 Sorghum bicolor Sb03g028150 I 0.739
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.739
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.735
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.735
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.734
SB07G021250 Sorghum bicolor Sb07g021250 I 0.734
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.730
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.730
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.730
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.729
28649.m000223 Ricinus communis 28649.m000223 I 0.725
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.723
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.723
ppa004961m Prunus persica ppa004961m I 0.720
MDP0000796160 Malus x domestica MDP0000796160 I 0.714
PK14390.1 Cannabis sativa PK14390.1 I 0.714
SB01G034060 Sorghum bicolor Sb01g034060 I 0.714
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.714
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.713
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.709