cassava29285.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava29285.valid.m1 T49259_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.787
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29285.valid.m1 RRM 20 78
cassava29285.valid.m1 RRM 124 179
cassava29285.valid.m1 RRM 249 311

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006527 Ricinus communis 30169.m006527 I 0.967
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.956
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.956
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.950
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.950
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.950
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.944
ppa005791m Prunus persica ppa005791m I 0.944
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.939
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.928
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.928
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.911
MDP0000269393 Malus x domestica MDP0000269393 I 0.906
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.894
mgf005649m Mimulus guttatus mgf005649m I 0.885
mgf001230m Mimulus guttatus mgf001230m I 0.858
MDP0000236223 Malus x domestica MDP0000236223 N 0.828
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.809
MDP0000274672 Malus x domestica MDP0000274672 N 0.794
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.794
SB03G028150 Sorghum bicolor Sb03g028150 I 0.791
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.787
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.787
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.787
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.786
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.784
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.784
28649.m000223 Ricinus communis 28649.m000223 I 0.782
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.780
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.778
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.778
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.777
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.777
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.773
ppa004961m Prunus persica ppa004961m I 0.772
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.769
SB07G021250 Sorghum bicolor Sb07g021250 I 0.769
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.762
PK14390.1 Cannabis sativa PK14390.1 I 0.762
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.758
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.757
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.755
MDP0000796160 Malus x domestica MDP0000796160 I 0.751
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.745
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.739
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.725
SB01G034060 Sorghum bicolor Sb01g034060 I 0.725
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.704