LOC100390484 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000012631 T35590_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000023255 RRM 479 545
ENSCJAP00000023275 RRM 545 611
ENSCJAP00000023288 RRM 479 545
ENSCJAP00000051002 RRM 8 76

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH89292 Xenopus laevis AAH89292 N 0.881
Ame_R017029 Ailuropoda melanoleuca Ame_R017029 N 0.985
Ame_R017528 Ailuropoda melanoleuca Ame_R017528 N 0.746
ENSCPOG00000022216 Cavia porcellus ENSCPOG00000022216 N 0.985
ENSPPYG00000011355 Pongo pygmaeus ENSPPYG00000011355 N 0.746
ENSPPYG00000017121 Pongo pygmaeus ENSPPYG00000017121 N 0.985
LOC100061852 Equus caballus ENSECAG00000005540 N 0.985
LOC100392289 Callithrix jacchus ENSCJAG00000008993 N 0.746
Q5F447_CHICK Gallus gallus ENSGALG00000015850 N 0.731
Q6JDJ9_CANFA Canis familiaris ENSCAFG00000000570 N 0.985
RBM16 Taeniopygia guttata ENSTGUG00000011151 N 0.985
RBM16 Gallus gallus ENSGALG00000013635 N 0.985
Rbm16 Rattus norvegicus ENSRNOG00000016919 N 0.970
rbm16 Xenopus tropicalis ENSXETG00000013132 N 0.881
SCAF4 Oryctolagus cuniculus ENSOCUG00000008336 N 0.746
SCAF4 Ochotona princeps ENSOPRG00000007016 N 0.746
SCAF4 Monodelphis domestica ENSMODG00000021040 N 0.746
Scaf4 Mus musculus ENSMUSG00000022983 N 0.746
SCAF4 Pteropus vampyrus ENSPVAG00000005220 N 0.746
SCAF4 Sorex araneus ENSSARG00000009994 N 0.731
SCAF4 Spermophilus tridecemlineatus ENSSTOG00000004450 N 0.746
SCAF4 Felis catus ENSFCAG00000002228 N 0.746
SCAF4 Tarsius syrichta ENSTSYG00000011344 N 0.746
SCAF4 Tursiops truncatus ENSTTRG00000010963 N 0.746
SCAF4 Macaca mulatta ENSMMUG00000001712 N 0.746
SCAF4 Myotis lucifugus ENSMLUG00000011472 N 0.746
SCAF4 Meleagris gallopavo ENSMGAG00000014515 N 0.731
SCAF4 Homo sapiens ENSG00000156304 N 0.746
SCAF4 Echinops telfairi ENSETEG00000000583 N 0.731
SCAF4 Erinaceus europaeus ENSEEUG00000015913 N 0.746
SCAF4 Gorilla gorilla ENSGGOG00000015557 N 0.746
Scaf4 Dipodomys ordii ENSDORG00000013851 N 0.746
SCAF4 Cavia porcellus ENSCPOG00000012443 N 0.746
SCAF4 Loxodonta africana ENSLAFG00000010710 N 0.746
SCAF4 Canis familiaris ENSCAFG00000008863 N 0.746
SCAF4 Procavia capensis ENSPCAG00000009998 N 0.746
SCAF8 Pteropus vampyrus ENSPVAG00000005582 N 0.985
SCAF8 Anolis carolinensis ENSACAG00000005282 N 0.985
SCAF8 Sus scrofa ENSSSCG00000004070 N 0.985
SCAF8 Danio rerio ENSDARG00000074786 N 0.940
SCAF8 Tetraodon nigroviridis ENSTNIG00000016885 N 0.910
SCAF8 Vicugna pacos ENSVPAG00000012465 N 0.985
SCAF8 Homo sapiens ENSG00000213079 N 0.985
SCAF8 Pan troglodytes ENSPTRG00000018727 N 0.985
SCAF8 Macaca mulatta ENSMMUG00000015163 N 0.985
SCAF8 Monodelphis domestica ENSMODG00000008301 N 0.955
Scaf8 Mus musculus ENSMUSG00000046201 N 0.970
SCAF8 Loxodonta africana ENSLAFG00000000022 N 0.985
SCAF8 Oryctolagus cuniculus ENSOCUG00000026063 N 0.985
SCAF8 Ochotona princeps ENSOPRG00000018413 N 0.985
SCAF8 Oryzias latipes ENSORLG00000017358 N 0.881
SCAF8 Takifugu rubripes ENSTRUG00000009243 N 0.910
SCAF8 Gasterosteus aculeatus ENSGACG00000006909 N 0.925
SCAF8 Gorilla gorilla ENSGGOG00000008645 N 0.985
SCAF8 Procavia capensis ENSPCAG00000013044 N 0.926
SCAF8 Meleagris gallopavo ENSMGAG00000012762 N 0.985
SFR15_RAT Rattus norvegicus ENSRNOG00000002104 N 0.746
SFRS15 Equus caballus ENSECAG00000014248 N 0.746
SFRS15 Bos taurus ENSBTAG00000018855 N 0.746
SFRS15 Taeniopygia guttata ENSTGUG00000013464 N 0.731
XR_025194.1 Pan troglodytes ENSPTRG00000013848 N 0.746