CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPA
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000009838
T37474_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.942
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.942
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.942
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.942
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.942
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.942
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.942
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.942
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.819
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000013006
RRM
12
83
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNLRMKGQAFVIFKEVNSASNALRSMQGFPFYDKPMR
ENSGACP00000013006
RRM
205
269
LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQANA
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
116 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30128.m009003
Ricinus communis
30128.m009003
N
0.000
BGIOSIBCE013536
Oryza indica
BGIOSIBCE013536
N
0.000
BRADI1G03180
Brachypodium distachyon
BRADI1G03180
N
0.000
cassava12877.valid.m1
Manihot esculenta
cassava12877.valid.m1
N
0.000
fgenesh1_pg.C_scaffold_1242000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1242000001
N
0.000
fgenesh1_pg.C_scaffold_1347000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1347000001
N
0.000
fgenesh1_pg.C_scaffold_135000007
Phytophthora ramorum
fgenesh1_pg.C_scaffold_135000007
N
0.000
fgenesh1_pg.C_scaffold_1590000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1590000001
N
0.000
fgenesh1_pg.C_scaffold_17000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_17000001
N
0.000
fgenesh1_pg.C_scaffold_20000020
Phytophthora ramorum
fgenesh1_pg.C_scaffold_20000020
N
0.000
fgenesh1_pg.C_scaffold_2072000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2072000002
N
0.000
fgenesh1_pg.C_scaffold_2102000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2102000001
N
0.000
fgenesh1_pg.C_scaffold_23000077
Phytophthora ramorum
fgenesh1_pg.C_scaffold_23000077
N
0.000
fgenesh1_pg.C_scaffold_2342000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2342000001
N
0.000
fgenesh1_pg.C_scaffold_2352000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2352000001
N
0.000
fgenesh1_pg.C_scaffold_315000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_315000002
N
0.000
fgenesh1_pg.C_scaffold_32000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_32000002
N
0.000
fgenesh1_pg.C_scaffold_49000015
Phytophthora ramorum
fgenesh1_pg.C_scaffold_49000015
N
0.000
fgenesh1_pg.C_scaffold_58000098
Phytophthora ramorum
fgenesh1_pg.C_scaffold_58000098
N
0.000
fgenesh1_pg.C_scaffold_6000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_6000001
N
0.000
fgenesh1_pg.C_scaffold_737000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_737000002
N
0.000
fgenesh1_pg.C_scaffold_911000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_911000002
N
0.000
fgenesh1_pg.C_scaffold_937000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_937000002
N
0.000
Glyma03g38550.1
Glycine max
Glyma03g38550.1
N
0.000
Glyma19g41150.1
Glycine max
Glyma19g41150.1
N
0.000
Glyma20g22120.1
Glycine max
Glyma20g22120.1
N
0.000
GRMZM2G163072
Zea mays
GRMZM2G163072
N
0.000
GRMZM2G415491
Zea mays
GRMZM2G415491
N
0.000
LjB06P23.40.nc
Lotus japonicus
LjB06P23.40.nc
N
0.000
LOC_Os03g61220
Oryza sativa
LOC_Os03g61220
N
0.000
Medtr1g103590
Medicago truncatula
Medtr1g103590
N
0.000
PGTG_11598
Puccinia graminis
PGTG_11598
N
0.000
Sb01g002660
Sorghum bicolor
Sb01g002660
N
0.000
Sjc_0087940
Schistosoma japonicum
Sjc_0087940
N
0.000