SNRPA (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000009838 T37474_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.942
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.942
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.942
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.942
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.942
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.942
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.942
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.942
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.819
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013006 RRM 12 83
ENSGACP00000013006 RRM 205 269

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.766
186191 Helobdella robusta 186191 I 0.708
AAEL002980 Aedes aegypti AAEL002980 I 0.819
AAEL014167 Aedes aegypti AAEL014167 I 0.819
AAH44979 Xenopus laevis AAH44979 I 0.920
AAH72799 Xenopus laevis AAH72799 I 0.748
AAH84107 Xenopus laevis AAH84107 I 0.761
AGAP011637 Anopheles gambiae AGAP011637 I 0.812
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.827
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.942
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.763
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.812
CAA41021 Xenopus laevis CAA41021 I 0.920
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.804
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.804
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.768
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.783
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.848
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.745
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.942
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.942
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.763
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.847
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.847
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.847
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.818
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.752
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.870
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.819
GE16390 Drosophila yakuba FBgn0233919 I 0.819
GF21334 Drosophila ananassae FBgn0098336 I 0.819
GG18748 Drosophila erecta FBgn0110957 I 0.819
GH24608 Drosophila grimshawi FBgn0132064 I 0.826
GJ16850 Drosophila virilis FBgn0204029 I 0.826
GK25839 Drosophila willistoni FBgn0227798 I 0.826
GL14287 Drosophila persimilis FBgn0151892 I 0.819
GM12396 Drosophila sechellia FBgn0167333 I 0.819
Gm5145 Mus musculus ENSMUSG00000071273 I 0.790
LOC100050830 Equus caballus ENSECAG00000018407 I 0.763
LOC100068274 Equus caballus ENSECAG00000013141 I 0.942
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.710
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.759
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.763
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.920
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.763
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.842
P45429 Xenopus laevis P45429 I 0.920
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.763
snf Drosophila mojavensis FBgn0069598 I 0.826
snf Drosophila melanogaster FBgn0003449 D 0.819
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.920
SNRPA Microcebus murinus ENSMICG00000009766 I 0.790
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.928
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.964
SNRPA Sus scrofa ENSSSCG00000002998 I 0.942
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.942
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.942
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.826
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.819
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.942
SNRPA Canis familiaris ENSCAFG00000005091 I 0.942
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.942
snrpa Danio rerio ENSDARG00000018890 I 0.949
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.928
SNRPA Echinops telfairi ENSETEG00000019205 I 0.899
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.942
SNRPA Felis catus ENSFCAG00000016209 I 0.942
SNRPA Homo sapiens ENSG00000077312 D 0.942
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.942
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.942
SNRPA Procavia capensis ENSPCAG00000012325 I 0.942
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.891
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.935
Snrpa Mus musculus ENSMUSG00000061479 I 0.935
SNRPA Oryzias latipes ENSORLG00000006536 I 0.956
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.942
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.942
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.942
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.942
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.942
SNRPB2 Homo sapiens ENSG00000125870 I 0.763
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.737
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.770
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.755
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.763
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.717
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.763
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.755
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.755
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.763
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.763
snrpb2 Danio rerio ENSDARG00000039424 I 0.759
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.741
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.763
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.763
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.763
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.770
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.763
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.763
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.763
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.763
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.763
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.763
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.727
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.745
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.763
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.763
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.755
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.763
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.770
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.745
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.737
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.763
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.755
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.763
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.825