Medtr1g103590 (Medicago truncatula)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Medtr1g103590 T15074_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g103590.1 CCHC ZF 598 615

Links

Other CCHC ZF family RBPs
Other Medicago truncatula RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.889
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.889
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.833
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.833
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.833
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.833
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.833
mgf008200m Mimulus guttatus mgf008200m N 0.778
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.778
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.778
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.778
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.778
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.778
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.778
30128.m009003 Ricinus communis 30128.m009003 N 0.778
CNBG_1048 Cryptococcus neoformans CNBG_1048 N 0.722
mgf012653m Mimulus guttatus mgf012653m N 0.722
PK16552.1 Cannabis sativa PK16552.1 N 0.722
fgenesh1_pg.C_scaffold_3000233 Neurospora tetrasperma fgenesh1_pg.C_scaffold_3000233 N 0.722
NCU00483 Neurospora crassa NCU00483 N 0.722
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.722
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.722
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.722
fgeneshEH_pg.19__19 Emiliania huxleyi fgeneshEH_pg.19__19 N 0.722