Rbm42 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000036733 T39337_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000040005 RRM 381 451
ENSMUSP00000103776 RRM 352 422
ENSMUSP00000103778 RRM 377 447

Links

Other RRM family RBPs
Other Mus musculus RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2VDB3 Xenopus laevis A2VDB3 I 0.944
AAI29577 Xenopus laevis AAI29577 I 0.901
AAI29698 Xenopus laevis AAI29698 I 0.944
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 1.000
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.887
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 1.000
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 1.000
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.958
LOC100051102 Equus caballus ENSECAG00000018215 I 1.000
RBM42 Oryzias latipes ENSORLG00000003387 I 0.958
RBM42 Procavia capensis ENSPCAG00000013053 I 1.000
RBM42 Pan troglodytes ENSPTRG00000010852 I 1.000
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 1.000
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 1.000
RBM42 Sorex araneus ENSSARG00000010724 I 1.000
RBM42 Sus scrofa ENSSSCG00000002905 I 1.000
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 1.000
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.958
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.958
RBM42 Tarsius syrichta ENSTSYG00000014688 I 1.000
RBM42 Ochotona princeps ENSOPRG00000001229 I 1.000
RBM42 Otolemur garnettii ENSOGAG00000004144 I 1.000
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 1.000
RBM42 Canis familiaris ENSCAFG00000006925 I 1.000
RBM42 Callithrix jacchus ENSCJAG00000010220 I 1.000
RBM42 Cavia porcellus ENSCPOG00000012365 I 1.000
rbm42 Danio rerio ENSDARG00000039910 I 0.944
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 1.000
RBM42 Felis catus ENSFCAG00000006376 I 0.859
RBM42 Homo sapiens ENSG00000126254 D 1.000
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.958
RBM42 Gorilla gorilla ENSGGOG00000009972 I 1.000
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.887
RBM42 Microcebus murinus ENSMICG00000009880 I 1.000
RBM42 Myotis lucifugus ENSMLUG00000011334 I 1.000
RBM42 Macaca mulatta ENSMMUG00000018954 I 1.000
RBM42 Monodelphis domestica ENSMODG00000013957 I 1.000
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.972
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 1.000