CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Rbm42
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000036733
T39337_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
1.000
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000040005
RRM
381
451
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
ENSMUSP00000103776
RRM
352
422
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
ENSMUSP00000103778
RRM
377
447
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A2VDB3
Xenopus laevis
A2VDB3
I
0.944
AAI29577
Xenopus laevis
AAI29577
I
0.901
AAI29698
Xenopus laevis
AAI29698
I
0.944
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
1.000
ENSMEUG00000003054
Macropus eugenii
ENSMEUG00000003054
I
0.887
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
1.000
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
1.000
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.958
LOC100051102
Equus caballus
ENSECAG00000018215
I
1.000
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.958
RBM42
Procavia capensis
ENSPCAG00000013053
I
1.000
RBM42
Pan troglodytes
ENSPTRG00000010852
I
1.000
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
1.000
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
1.000
RBM42
Sorex araneus
ENSSARG00000010724
I
1.000
RBM42
Sus scrofa
ENSSSCG00000002905
I
1.000
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
1.000
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.958
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.958
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
1.000
RBM42
Ochotona princeps
ENSOPRG00000001229
I
1.000
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
1.000
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
1.000
RBM42
Canis familiaris
ENSCAFG00000006925
I
1.000
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
1.000
RBM42
Cavia porcellus
ENSCPOG00000012365
I
1.000
rbm42
Danio rerio
ENSDARG00000039910
I
0.944
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
1.000
RBM42
Felis catus
ENSFCAG00000006376
I
0.859
RBM42
Homo sapiens
ENSG00000126254
D
1.000
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.958
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
1.000
RBM42
Loxodonta africana
ENSLAFG00000014993
N
0.887
RBM42
Microcebus murinus
ENSMICG00000009880
I
1.000
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
1.000
RBM42
Macaca mulatta
ENSMMUG00000018954
I
1.000
RBM42
Monodelphis domestica
ENSMODG00000013957
I
1.000
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.972
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
1.000