CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM42
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000005495
T34637_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.986
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.972
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000005383
RRM
350
420
IFCGDLGNEVNDDILARAFSRYPSFLKAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
107 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.986
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.986
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.986
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.986
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.986
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.972
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.972
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.972
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.972
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.972
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.972
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.972
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.972
A2VDB3
Xenopus laevis
A2VDB3
I
0.972
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.972
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.972
AAI29698
Xenopus laevis
AAI29698
I
0.972
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.972
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.972
RBM42
Sorex araneus
ENSSARG00000010724
I
0.972
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.972
rbm42
Danio rerio
ENSDARG00000039910
I
0.972
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.972
RBM42
Homo sapiens
ENSG00000126254
D
0.972
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.972
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.972
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.972
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.972
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.972
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.972
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.972
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.972
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.972
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.972
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.972
AAI29577
Xenopus laevis
AAI29577
I
0.930
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.901
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.901
ENSMEUG00000003054
Macropus eugenii
ENSMEUG00000003054
I
0.873
RBM42
Loxodonta africana
ENSLAFG00000014993
N
0.859
RBM42
Felis catus
ENSFCAG00000006376
I
0.831
RBM42
Echinops telfairi
ENSETEG00000007878
I
0.789
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.789
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.789
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.789
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.775
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.775
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.775
AGAP010200
Anopheles gambiae
AGAP010200
I
0.761
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.761
PHUM106890
Pediculus humanus
PHUM106890
I
0.761
PK16312.1
Cannabis sativa
PK16312.1
I
0.761
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.746
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.746
mgf021739m
Mimulus guttatus
mgf021739m
I
0.746
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.746
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.746
CRE29329
Caenorhabditis remanei
CRE29329
I
0.746
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.746
Bm1_40380
Brugia malayi
Bm1_40380
I
0.746
LOAG_04208
Loa loa
LOAG_04208
I
0.746
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.746
AAEL010642
Aedes aegypti
AAEL010642
I
0.746
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.746
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.746
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.746
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.746
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.746
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.746
Aqu1.218430
Amphimedon queenslandica
Aqu1.218430
I
0.746
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.746
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.746
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.746
29680.m001693
Ricinus communis
29680.m001693
I
0.746
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.746
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.746
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.746
ppa010477m
Prunus persica
ppa010477m
I
0.732
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.732
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.732
76581
Helobdella robusta
76581
I
0.732
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.732
e_gw.92.129.1
Nematostella vectensis
e_gw.92.129.1
I
0.732
CJA09414
Caenorhabditis japonica
CJA09414
I
0.732
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.732
MDP0000283678
Malus x domestica
MDP0000283678
I
0.732
MDP0000320908
Malus x domestica
MDP0000320908
I
0.732
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.732
SNAPOd2T00026674001
Oikopleura dioica
SNAPOd2T00026674001
N
0.726
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.718
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.718
mgf018525m
Mimulus guttatus
mgf018525m
I
0.718
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.718
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.718
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.718
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.718
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.718
GL22151
Drosophila persimilis
FBgn0159743
I
0.704
GH22277
Drosophila grimshawi
FBgn0129737
I
0.704
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.704
GJ22705
Drosophila virilis
FBgn0209809
I
0.704
GK12952
Drosophila willistoni
FBgn0214961
I
0.704
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.704
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.704
Minc13155
Meloidogyne incognita
Minc13155
I
0.704
Sjc_0014630
Schistosoma japonicum
Sjc_0014630
N
0.704
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.704