RBM42 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000003387 T40107_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.972
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000004209 RRM 376 446
ENSORLP00000004210 RRM 306 376

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM42 Takifugu rubripes ENSTRUG00000004663 I 1.000
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 1.000
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 1.000
rbm42 Danio rerio ENSDARG00000039910 I 0.986
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.986
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.972
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.958
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.958
RBM42 Microcebus murinus ENSMICG00000009880 I 0.958
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.958
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.958
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.958
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.958
RBM42 Canis familiaris ENSCAFG00000006925 I 0.958
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.958
RBM42 Homo sapiens ENSG00000126254 D 0.958
AAI29698 Xenopus laevis AAI29698 I 0.958
LOC100051102 Equus caballus ENSECAG00000018215 I 0.958
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.958
A2VDB3 Xenopus laevis A2VDB3 I 0.958
RBM42 Sorex araneus ENSSARG00000010724 I 0.958
RBM42 Sus scrofa ENSSSCG00000002905 I 0.958
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.958
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.958
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.958
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.958
RBM42 Procavia capensis ENSPCAG00000013053 I 0.958
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.958
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.958
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.958
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.958
Rbm42 Mus musculus ENSMUSG00000036733 I 0.958
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.958
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.958
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.958
AAI29577 Xenopus laevis AAI29577 I 0.915
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.887
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.887
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.859
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.859
RBM42 Felis catus ENSFCAG00000006376 I 0.817
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.803
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.803
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.789
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.789
PHUM106890 Pediculus humanus PHUM106890 I 0.775
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.775
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.775
RBM42 Echinops telfairi ENSETEG00000007878 I 0.775
PK16312.1 Cannabis sativa PK16312.1 I 0.775
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.761
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.761
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.761
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.761
CRE29329 Caenorhabditis remanei CRE29329 I 0.761
CBG21313 Caenorhabditis briggsae CBG21313 I 0.761
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.761
CBN12017 Caenorhabditis brenneri CBN12017 I 0.761
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.761
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.761
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.761
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.761
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.761
mgf021739m Mimulus guttatus mgf021739m I 0.761
29680.m001693 Ricinus communis 29680.m001693 I 0.761
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.761
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.761
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.761
MDP0000320908 Malus x domestica MDP0000320908 I 0.746
AGAP010200 Anopheles gambiae AGAP010200 I 0.746
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.746
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.746
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.746
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.746
ppa010477m Prunus persica ppa010477m I 0.746
CJA09414 Caenorhabditis japonica CJA09414 I 0.746
MDP0000283678 Malus x domestica MDP0000283678 I 0.746
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.732
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.732
AAEL010642 Aedes aegypti AAEL010642 I 0.732
mgf018525m Mimulus guttatus mgf018525m I 0.732
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.732
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.732
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.732
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.732
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.732
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.732
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.732
Bm1_40380 Brugia malayi Bm1_40380 I 0.732
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.732
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.732
LOAG_04208 Loa loa LOAG_04208 I 0.732
76581 Helobdella robusta 76581 I 0.718
SB04G026430 Sorghum bicolor Sb04g026430 I 0.718
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.718
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.718
Sjc_0014630 Schistosoma japonicum Sjc_0014630 N 0.718
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.712
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.708
mgf008981m Mimulus guttatus mgf008981m I 0.708
CG2931 Drosophila melanogaster FBgn0037342 D 0.704
GF11626 Drosophila ananassae FBgn0088666 I 0.704
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.704
GE24162 Drosophila yakuba FBgn0241294 I 0.704
GM10617 Drosophila sechellia FBgn0165563 I 0.704
GP3.076550 Batrachochytrium dendrobatidis GP3.076550 I 0.704
gw1.1.892.1 Trichoplax adhaerens gw1.1.892.1 N 0.704
Minc13155 Meloidogyne incognita Minc13155 I 0.704
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.704
estExt_Genewise1.C_30147 Volvox carteri estExt_Genewise1.C_30147 N 0.704
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.704
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.704
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.704
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.704