PABPC1L (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000011846 T40020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.777
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.777
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.777
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.762
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000010811 RRM 13 83
ENSOPRP00000010811 RRM 101 169
ENSOPRP00000010811 RRM 193 262
ENSOPRP00000010811 RRM 296 364

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.789
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.781
AAA60936 Xenopus laevis AAA60936 I 0.763
AAH52100 Xenopus laevis AAH52100 I 0.767
AAH71118 Xenopus laevis AAH71118 I 0.828
AAH72110 Xenopus laevis AAH72110 I 0.781
AAH73435 Xenopus laevis AAH73435 I 0.781
AAH80020 Xenopus laevis AAH80020 I 0.828
AAI08463 Xenopus laevis AAI08463 I 0.781
AAK29408 Xenopus laevis AAK29408 I 0.828
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.778
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.935
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.724
CAA40721 Xenopus laevis CAA40721 I 0.767
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.767
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.789
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.728
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.796
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.799
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.781
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.799
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.789
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.756
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.796
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.778
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.799
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.799
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.799
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.785
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.785
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.771
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.939
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.799
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.799
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.799
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.785
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.781
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.778
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.799
Gm10110 Mus musculus ENSMUSG00000062093 I 0.785
LOC100054235 Equus caballus ENSECAG00000009396 I 0.789
LOC100070836 Equus caballus ENSECAG00000022681 I 0.928
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.774
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.799
P20965 Xenopus laevis P20965 I 0.767
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.799
PABPC1 Homo sapiens ENSG00000070756 D 0.799
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.781
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.796
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.796
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.796
pabpc1a Danio rerio ENSDARG00000017219 I 0.778
pabpc1b Danio rerio ENSDARG00000021140 I 0.771
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.839
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.703
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.814
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.860
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.928
PABPC1L Gallus gallus ENSGALG00000004123 I 0.842
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.885
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.939
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.781
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.907
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.778
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.900
PABPC1L Bos taurus ENSBTAG00000016849 I 0.939
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.935
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.928
pabpc1l Danio rerio ENSDARG00000002597 I 0.785
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.900
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.803
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.921
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.889
PABPC1L Homo sapiens ENSG00000101104 I 0.939
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.935
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.907
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.950
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.943
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.724
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.878
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.753
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.882
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.921
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.846
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.857
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.771
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.767
PABPC3 Homo sapiens ENSG00000151846 D 0.749
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.767
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.761
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.789
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.789
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.785
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.767
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.789
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.792
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.720
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.792
pabpc4 Danio rerio ENSDARG00000059259 I 0.771
PABPC4 Homo sapiens ENSG00000090621 D 0.785
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.781
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.781
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.785
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.756
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.789
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.785
PABPC4 Gallus gallus ENSGALG00000003800 I 0.778
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.789
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.778
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.760
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.756
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.789
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.789
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.753
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.756
Q6GR16 Xenopus laevis Q6GR16 I 0.828
Q6IP09 Xenopus laevis Q6IP09 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.763
Q98SP8 Xenopus laevis Q98SP8 I 0.828
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.771
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.778
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.720
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.796
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.789