PABPC1L (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000011846 T40020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.777
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.777
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.777
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.762
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000010811 RRM 13 83
ENSOPRP00000010811 RRM 101 169
ENSOPRP00000010811 RRM 193 262
ENSOPRP00000010811 RRM 296 364

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29609.m000599 Ricinus communis 29609.m000599 N 0.000
AT1G10320 Arabidopsis thaliana AT1G10320-TAIR-G N 0.000
BGIOSIBCE007424 Oryza indica BGIOSIBCE007424 N 0.000
Glyma08g17310.1 Glycine max Glyma08g17310.1 N 0.000
Glyma15g39220.1 Glycine max Glyma15g39220.1 N 0.000
GSVIVG00023150001 Vitis vinifera GSVIVG00023150001 N 0.000
LOC_Os02g35150 Oryza sativa LOC_Os02g35150 N 0.000
MDP0000172441 Malus x domestica MDP0000172441 N 0.000
mgf026159m Mimulus guttatus mgf026159m N 0.000
PK13905.1 Cannabis sativa PK13905.1 N 0.000
ppa023225m Prunus persica ppa023225m N 0.000