D3ZE54_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000008657 T41061_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.753
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.753
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.753
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.753
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.753
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.753
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043856 RRM 22 91
ENSRNOP00000043856 RRM 103 170
ENSRNOP00000043856 RRM 221 287

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB01496.1 Alternaria brassicicola AB01496.1 N 0.000
ACLA_068950 Aspergillus clavatus CADACLAG00006993 N 0.000
AFLA_044710 Aspergillus flavus CADAFLAG00005798 N 0.000
AFUA_2G09870 Aspergillus fumigatus CADAFUAG00004789 N 0.000
An16g05260 Aspergillus niger CADANGAG00012995 N 0.000
ANIA_10765 Aspergillus nidulans CADANIAG00007002 N 0.000
AO090011000648 Aspergillus oryzae CADAORAG00005372 N 0.000
ARB_05170 Arthroderma benhamiae ARB_05170 N 0.000
ATEG_04425 Aspergillus terreus CADATEAG00007866 N 0.000
BC1G_11662 Botrytis cinerea BC1G_11662 N 0.000
BDBG_06989 Blastomyces dermatitidis BDBG_06989 N 0.000
CHGG_04600 Chaetomium globosum CHGG_04600 N 0.000
CIMG_07824 Coccidioides immitis CIMG_07824 N 0.000
CPSG_09863 Coccidioides posadasii CPSG_09863 N 0.000
EAT79965.2 Phaeosphaeria nodorum EAT79965.2 N 0.000
estExt_fgenesh1_kg.C_20030 Trichoderma atroviride estExt_fgenesh1_kg.C_20030 N 0.000
estExt_fgenesh1_pg.C_sca_18_chr2_1_00570 Nectria haematococca estExt_fgenesh1_pg.C_sca_18_chr2_1_00570 N 0.000
estExt_fgenesh1_pm.C_chr_50176 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_50176 N 0.000
estExt_fgenesh3_kg.C_30075 Neurospora discreta estExt_fgenesh3_kg.C_30075 N 0.000
estExt_Genewise1.C_150133 Neurospora tetrasperma estExt_Genewise1.C_150133 N 0.000
estExt_Genewise1.C_32423 Cryphonectria parasitica estExt_Genewise1.C_32423 N 0.000
estExt_Genewise1Plus.C_11394 Thielavia terrestris estExt_Genewise1Plus.C_11394 N 0.000
estExt_Genewise1Plus.C_11766 Trichoderma virens estExt_Genewise1Plus.C_11766 N 0.000
e_gw1.23.134.1 Cochliobolus heterostrophus C5 e_gw1.23.134.1 N 0.000
fgenesh1_kg.1_#_222_#_2209_1_CCWO_CCWP_EXTA Myceliophthora thermophila fgenesh1_kg.1_#_222_#_2209_1_CCWO_CCWP_EXTA N 0.000
fgenesh1_pg.C_scaffold_7000150 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_7000150 N 0.000
fgenesh1_pm.00168_#_326 Aspergillus carbonarius fgenesh1_pm.00168_#_326 N 0.000
FGSG_05065 Fusarium graminearum FGSG_05065 N 0.000
FOXG_08630 Fusarium oxysporum FOXG_08630 N 0.000
FVEG_06043 Fusarium verticillioides FVEG_06043 N 0.000
GLRG_08326 Colletotrichum graminicola GLRG_08326 N 0.000
GSTUMT00000237001 Tuber melanosporum GSTUMT00000237001 N 0.000
HCAG_08183 Histoplasma capsulatum HCAG_08183 N 0.000
MCYG_04562 Microsporum canis MCYG_04562 N 0.000
MGG_07109 Magnaporthe oryzae MGG_07109 N 0.000
MGYG_08099 Microsporum gypseum MGYG_08099 N 0.000
NCU08046 Neurospora crassa NCU08046 N 0.000
NFIA_085320 Neosartorya fischeri CADNFIAG00007580 N 0.000
PABG_02041 Paracoccidioides brasiliensis PABG_02041 N 0.000
Pa_6_2610 Podospora anserina Pa_6_2610 N 0.000
Pc22g19890 Penicillium chrysogenum Pc22g19890 N 0.000
PMAA_087020 Penicillium marneffei PMAA_087020 N 0.000
PTRG_11278 Pyrenophora tritici repentis PTRG_11278 N 0.000
SNOG_12667 Stagonospora nodorum SNOG_12667 N 0.000
SS1G_09745 Sclerotinia sclerotiorum SS1G_09745 N 0.000
TEQG_08157 Trichophyton equinum TEQG_08157 N 0.000
TERG_03155 Trichophyton rubrum TERG_03155 N 0.000
TESG_02700 Trichophyton tonsurans TESG_02700 N 0.000
TRV_03582 Trichophyton verrucosum TRV_03582 N 0.000
UREG_02154 Uncinocarpus reesii UREG_02154 N 0.000
VDAG_00435 Verticillium dahliae VDAG_00435 N 0.000
VDBG_00824 Verticillium albo atrum VDBG_00824 N 0.000