AAI16460 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAI16460 T59618_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.910
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.910
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.910
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.910
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.910
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.910
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.753
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.753
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.753
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.731
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.731
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI16460 RRM 22 103
AAI16460 RRM 119 187
AAI16460 RRM 257 327

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q1JQ73 Xenopus laevis Q1JQ73 I 1.000
AAA96942 Xenopus laevis AAA96942 I 0.950
AAH86269 Xenopus laevis AAH86269 I 0.946
Q5U259 Xenopus laevis Q5U259 I 0.946
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.941
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.910
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.910
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.910
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.910
ELAVL1 Homo sapiens ENSG00000066044 D 0.910
ELAVL1 Felis catus ENSFCAG00000014947 I 0.910
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.910
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.910
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.910
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.910
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.910
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.910
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.910
LOC100060819 Equus caballus ENSECAG00000019459 I 0.905
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.905
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.905
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.901
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.901
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.901
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.901
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.901
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.901
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.901
Elavl1 Mus musculus ENSMUSG00000040028 I 0.901
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.901
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.896
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.892
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.849
elavl1 Danio rerio ENSDARG00000038695 I 0.847
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.839
hug Danio rerio ENSDARG00000016405 I 0.838
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.820
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.820
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.815
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.802
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.784
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.761
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.757
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.757
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.753
AAH94189 Xenopus laevis AAH94189 I 0.753
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.753
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.753
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.753
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.753
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.753
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.753
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.753
Elavl2 Mus musculus ENSMUSG00000008489 I 0.753
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.753
Q91903 Xenopus laevis Q91903 I 0.753
AAA96943 Xenopus laevis AAA96943 I 0.753
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.753
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.753
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.753
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.753
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.753
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.753
ELAVL2 Homo sapiens ENSG00000107105 D 0.753
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.753
ELAVL2 Equus caballus ENSECAG00000020142 I 0.753
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.753
AAI70539 Xenopus laevis AAI70539 I 0.753
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.753
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.753
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.753
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.753
CAA59430 Xenopus laevis CAA59430 I 0.749
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.749
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.748
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.748
elavl2 Danio rerio ENSDARG00000040732 I 0.744
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.744
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.743
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.743
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.743
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.743
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.740
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.740
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.740
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.739
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.734
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.731
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.731
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.731
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.731
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.731
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.731
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.731
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.731
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.731
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.731
AAH99348 Xenopus laevis AAH99348 I 0.731
AAA96945 Xenopus laevis AAA96945 I 0.731
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.731
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.731
ELAVL4 Homo sapiens ENSG00000162374 D 0.731
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.731
LOC100051268 Equus caballus ENSECAG00000022284 I 0.731
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.731
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.731
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.731
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.731
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.731
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.731
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.731
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.731
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.731
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.731
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.731
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.731
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.731
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.731
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.731
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.731
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.731
Elavl4 Mus musculus ENSMUSG00000028546 I 0.731
CBU92440 Xenopus laevis CBU92440 I 0.731
CBF67567 Xenopus laevis CBF67567 I 0.731
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.731
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.731
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.731
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.731
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.731
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.731
elavl4 Danio rerio ENSDARG00000045639 I 0.729
elavl3 Danio rerio ENSDARG00000014420 I 0.721
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.721
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.721
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.716
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.714
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.713
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.713
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.712
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.712
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.712
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.712
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.712
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.712
ELAVL3 Homo sapiens ENSG00000196361 I 0.712
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.712
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.712
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.712
Elavl3 Mus musculus ENSMUSG00000003410 I 0.712
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.712
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.711
Q91584 Xenopus laevis Q91584 I 0.709
AAI69769 Xenopus laevis AAI69769 I 0.709
AAA96944 Xenopus laevis AAA96944 I 0.709
D3ZE54_RAT Rattus norvegicus ENSRNOG00000008657 I 0.709
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.705
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.703