D3ZE54_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000008657 T41061_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.753
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.753
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.753
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.753
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.753
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.753
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043856 RRM 22 91
ENSRNOP00000043856 RRM 103 170
ENSRNOP00000043856 RRM 221 287

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.774
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.774
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.774
Elavl1 Mus musculus ENSMUSG00000040028 I 0.774
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.774
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.769
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.769
ELAVL1 Homo sapiens ENSG00000066044 D 0.764
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.764
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.764
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.764
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.764
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.764
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.764
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.764
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.764
ELAVL1 Felis catus ENSFCAG00000014947 I 0.764
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.764
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.764
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.764
LOC100060819 Equus caballus ENSECAG00000019459 I 0.764
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.759
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.755
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.755
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.755
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.750
Q5U259 Xenopus laevis Q5U259 I 0.750
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.750
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.750
AAH86269 Xenopus laevis AAH86269 I 0.750
AAA96942 Xenopus laevis AAA96942 I 0.745
Q1JQ73 Xenopus laevis Q1JQ73 I 0.709
AAI16460 Xenopus laevis AAI16460 I 0.709