AAH86269 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH86269 T59579_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.962
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.962
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.962
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.962
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.962
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.962
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.788
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.788
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.788
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.764
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.764
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH86269 RRM 22 92
AAH86269 RRM 108 176
AAH86269 RRM 246 316

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q5U259 Xenopus laevis Q5U259 I 1.000
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.995
AAA96942 Xenopus laevis AAA96942 I 0.995
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.962
ELAVL1 Felis catus ENSFCAG00000014947 I 0.962
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.962
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.962
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.962
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.962
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.962
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.962
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.962
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.962
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.962
ELAVL1 Homo sapiens ENSG00000066044 D 0.962
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.962
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.957
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.957
LOC100060819 Equus caballus ENSECAG00000019459 I 0.957
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.953
Elavl1 Mus musculus ENSMUSG00000040028 I 0.953
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.953
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.953
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.953
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.953
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.953
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.953
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.953
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.948
AAI16460 Xenopus laevis AAI16460 I 0.946
Q1JQ73 Xenopus laevis Q1JQ73 I 0.946
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.943
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.893
elavl1 Danio rerio ENSDARG00000038695 I 0.892
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.883
hug Danio rerio ENSDARG00000016405 I 0.873
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.863
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.863
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.858
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.844
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.825
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.806
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.801
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.801
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.791
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.788
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.788
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.788
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.788
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.788
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.788
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.788
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.788
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.788
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.788
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.788
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.788
Elavl2 Mus musculus ENSMUSG00000008489 I 0.788
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.788
AAI70539 Xenopus laevis AAI70539 I 0.788
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.788
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.788
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.788
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.788
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.788
ELAVL2 Homo sapiens ENSG00000107105 D 0.788
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.788
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.788
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.788
AAH94189 Xenopus laevis AAH94189 I 0.788
ELAVL2 Equus caballus ENSECAG00000020142 I 0.788
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.787
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.787
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.787
AAA96943 Xenopus laevis AAA96943 I 0.784
Q91903 Xenopus laevis Q91903 I 0.784
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.783
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.782
CAA59430 Xenopus laevis CAA59430 I 0.779
elavl2 Danio rerio ENSDARG00000040732 I 0.778
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.778
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.778
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.777
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.774
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.774
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.774
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.774
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.769
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.764
AAA96945 Xenopus laevis AAA96945 I 0.764
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.764
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.764
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.764
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.764
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.764
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.764
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.764
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.764
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.764
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.764
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.764
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.764
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.764
LOC100051268 Equus caballus ENSECAG00000022284 I 0.764
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.764
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.764
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.764
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.764
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.764
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.764
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.764
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.764
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.764
CBU92440 Xenopus laevis CBU92440 I 0.764
CBF67567 Xenopus laevis CBF67567 I 0.764
AAH99348 Xenopus laevis AAH99348 I 0.764
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.764
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.764
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.764
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.764
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.764
ELAVL4 Homo sapiens ENSG00000162374 D 0.764
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.764
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.764
Elavl4 Mus musculus ENSMUSG00000028546 I 0.764
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.764
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.764
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.764
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.764
elavl4 Danio rerio ENSDARG00000045639 I 0.762
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.761
elavl3 Danio rerio ENSDARG00000014420 I 0.750
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.750
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.750
D3ZE54_RAT Rattus norvegicus ENSRNOG00000008657 I 0.750
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.745
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.743
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.742
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.742
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.741
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.741
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.741
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.741
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.741
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.741
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.741
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.741
ELAVL3 Homo sapiens ENSG00000196361 I 0.741
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.741
Elavl3 Mus musculus ENSMUSG00000003410 I 0.741
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.741
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.740
Q91584 Xenopus laevis Q91584 I 0.737
AAI69769 Xenopus laevis AAI69769 I 0.737
AAA96944 Xenopus laevis AAA96944 I 0.737
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.734
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.731
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.722
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.720
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.717
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.717
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.716
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.712
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.708
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.703